* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00665.28
|
1.0
|
2
|
3633.5
|
same-strand
|
Integrase core domain
|
2
|
PF13683.8
|
1.0
|
2
|
4167
|
same-strand
|
Integrase core domain
|
3
|
PF01551.24
|
1.0
|
2
|
259
|
same-strand
|
Peptidase family M23
|
4
|
PF01476.22
|
1.0
|
2
|
259
|
same-strand
|
LysM domain
|
5
|
PF02738.20
|
1.0
|
2
|
109
|
opposite-strand
|
Molybdopterin-binding domain of aldehyde dehydrogenase
|
6
|
PF01315.24
|
1.0
|
2
|
109
|
opposite-strand
|
Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
|
7
|
PF00941.23
|
1.0
|
2
|
2417
|
opposite-strand
|
FAD binding domain in molybdopterin dehydrogenase
|
8
|
PF03450.19
|
1.0
|
2
|
2417
|
opposite-strand
|
CO dehydrogenase flavoprotein C-terminal domain
|
9
|
PF01799.22
|
1.0
|
2
|
3292
|
opposite-strand
|
[2Fe-2S] binding domain
|
++ More..