* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00581.22
|
1.0
|
2
|
2410.5
|
opposite-strand
|
Rhodanese-like domain
|
2
|
PF00816.23
|
1.0
|
2
|
1959.5
|
same-strand
|
H-NS histone family
|
3
|
PF06610.15
|
1.0
|
2
|
842.0
|
opposite-strand
|
L-alanine exporter
|
4
|
PF09400.12
|
1.0
|
2
|
461.0
|
same-strand
|
Protein of unknown function (DUF2002)
|
5
|
PF05957.15
|
1.0
|
2
|
29.5
|
opposite-strand
|
DUF883 N-terminal domain
|
6
|
PF00462.26
|
1.0
|
2
|
173.0
|
opposite-strand
|
Glutaredoxin
|
7
|
PF07972.13
|
1.0
|
2
|
415.0
|
opposite-strand
|
NrdI Flavodoxin like
|
8
|
PF02867.17
|
1.0
|
2
|
798.0
|
opposite-strand
|
Ribonucleotide reductase, barrel domain
|
9
|
PF08343.12
|
1.0
|
2
|
798.0
|
opposite-strand
|
Ribonucleotide reductase N-terminal
|
10
|
PF00317.23
|
1.0
|
2
|
798.0
|
opposite-strand
|
Ribonucleotide reductase, all-alpha domain
|
11
|
PF00268.23
|
1.0
|
2
|
2952.0
|
opposite-strand
|
Ribonucleotide reductase, small chain
|
12
|
PF00005.29
|
1.0
|
2
|
4265.5
|
opposite-strand
|
ABC transporter
|
13
|
PF00571.30
|
1.0
|
2
|
4265.5
|
opposite-strand
|
CBS domain
|
++ More..