* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF06826.14
|
1.0
|
12
|
876
|
same-strand
|
Predicted Permease Membrane Region
|
2
|
PF02080.23
|
1.0
|
12
|
876
|
same-strand
|
TrkA-C domain
|
3
|
PF11045.10
|
1.0
|
12
|
228
|
opposite-strand
|
Putative inner membrane protein of Enterobacteriaceae
|
4
|
PF00462.26
|
1.0
|
12
|
-56
|
same-strand
|
Glutaredoxin
|
5
|
PF13098.8
|
0.75
|
9
|
-56
|
same-strand
|
Thioredoxin-like domain
|
6
|
PF00881.26
|
1.0
|
12
|
202
|
opposite-strand
|
Nitroreductase family
|
7
|
PF08443.13
|
1.0
|
12
|
994
|
opposite-strand
|
RimK-like ATP-grasp domain
|
8
|
PF18030.3
|
1.0
|
12
|
994
|
opposite-strand
|
RimK PreATP-grasp domain
|
9
|
PF02955.18
|
1.0
|
12
|
994
|
opposite-strand
|
Prokaryotic glutathione synthetase, ATP-grasp domain
|
10
|
PF02655.16
|
1.0
|
12
|
994
|
opposite-strand
|
ATP-grasp domain
|
11
|
PF10722.11
|
1.0
|
12
|
1960
|
opposite-strand
|
Putative bacterial sensory transduction regulator
|
12
|
PF13416.8
|
0.83
|
10
|
2787
|
opposite-strand
|
Bacterial extracellular solute-binding protein
|
13
|
PF13343.8
|
0.83
|
10
|
2787
|
opposite-strand
|
Bacterial extracellular solute-binding protein
|
14
|
PF01547.27
|
0.83
|
10
|
2787
|
opposite-strand
|
Bacterial extracellular solute-binding protein
|
15
|
PF13531.8
|
0.83
|
10
|
2787
|
opposite-strand
|
Bacterial extracellular solute-binding protein
|
++ More..