Result : A0M6N7
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L32 |
| NCBI Accession ID | CU207366.1 |
| Organism | Gramella forsetii (strain KT0803) |
| Left | 3505262 |
| Right | 3505459 |
| Strand | + |
| Nucleotide Sequence | ATGGCACATCCAAAGAGAAAAATCTCGAAAACCAGAAGAGATAAGAGAAGAACACATTATAAAGCTTCAGCTCCAAAAGTGGCTGTAGATGCTGTAACAGGTGAAGCACACTTGTATCACAGAGCTCACTGGCACGAAGGTAAACTATATTACCGAGGTCAGGTATTAATTGATAATACTGAAGAAGTAGAAGCATAG |
| Sequence | MAHPKRKISKTRRDKRRTHYKASAPKVAVDAVTGEAHLYHRAHWHEGKLYYRGQVLIDNTEEVEA |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl09115. Profile Description: Ribosomal L32p protein family. This protein describes bacterial ribosomal protein L32. The noise cutoff is set low enough to include the equivalent protein from mitochondria and chloroplasts. No related proteins from the Archaea nor from the eukaryotic cytosol are detected by this model. This model is a fragment model; the putative L32 of some species shows similarity only toward the N-terminus. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 17107561 |
| Domain | CDD:415589 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A0M6N7 |
| ORF Length (Amino Acid) | 65 |
++ More..
| Conservation Analysis |
No. of Species: 211
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3505262 | 3505459 | + | NC_008571.1 | Gramella forsetii KT0803 |
| 2 | 2289908 | 2290105 | - | NZ_CP018153.1 | Gramella salexigens |
| 3 | 1693760 | 1693957 | + | NZ_CP016359.1 | Gramella flava JLT2011 |
| 4 | 1172159 | 1172356 | - | NZ_CP028136.1 | Gramella fulva |
| 5 | 4985329 | 4985526 | - | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 6 | 2675151 | 2675348 | - | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 7 | 2622772 | 2622969 | + | NZ_CP019342.1 | Nonlabens tegetincola |
| 8 | 2334405 | 2334602 | + | NZ_CP040812.1 | Antarcticibacterium flavum |
| 9 | 557487 | 557684 | + | NC_014230.1 | Croceibacter atlanticus HTCC2559 |
| 10 | 1210730 | 1210927 | - | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 11 | 155530 | 155727 | - | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 12 | 1898696 | 1898893 | + | NZ_CP058595.1 | Costertonia aggregata |
| 13 | 1994636 | 1994833 | + | NZ_CP022957.1 | Maribacter cobaltidurans |
| 14 | 1325850 | 1326047 | - | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 15 | 2851630 | 2851824 | - | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 16 | 2700318 | 2700521 | + | NZ_CP012898.1 | Algibacter alginicilyticus |
| 17 | 608208 | 608405 | + | NZ_CP034549.1 | Nonlabens ponticola |
| 18 | 1411315 | 1411518 | - | NZ_CP025938.1 | Tamlana carrageenivorans |
| 19 | 1058454 | 1058657 | - | NZ_CP007202.1 | Siansivirga zeaxanthinifaciens CC-SAMT-1 |
| 20 | 2375186 | 2375389 | + | NC_018721.1 | Psychroflexus torquis ATCC 700755 |
| 21 | 146651 | 146848 | - | NZ_CP032050.1 | Euzebyella marina |
| 22 | 482214 | 482408 | - | NZ_LT899436.1 | Tenacibaculum jejuense |
| 23 | 1740832 | 1741035 | + | NZ_CP039456.1 | Changchengzhania lutea |
| 24 | 977213 | 977416 | + | NZ_CP041637.1 | Formosa sediminum |
| 25 | 1371442 | 1371642 | - | NZ_CP011071.1 | Muricauda lutaonensis |
| 26 | 1610954 | 1611154 | - | NZ_CP030104.1 | Flagellimonas maritima |
| 27 | 1067200 | 1067397 | - | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 28 | 1554329 | 1554526 | - | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 29 | 3099026 | 3099226 | + | NZ_CP025791.1 | Flavivirga eckloniae |
| 30 | 2800996 | 2801193 | + | NZ_CP017478.1 | Urechidicola croceus |
| 31 | 1904314 | 1904511 | - | NC_015844.1 | Zobellia galactanivorans |
| 32 | 1423576 | 1423773 | - | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 33 | 3457295 | 3457495 | - | NZ_CP019288.1 | Kordia antarctica |
| 34 | 2308200 | 2308394 | + | NZ_CP013355.1 | Lutibacter profundi |
| 35 | 4423222 | 4423425 | + | NZ_CP053351.1 | Winogradskyella schleiferi |
| 36 | 4207387 | 4207590 | - | NZ_CP053348.1 | Winogradskyella forsetii |
| 37 | 1367027 | 1367227 | + | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 38 | 258942 | 259139 | - | NZ_CP010817.1 | Myroides profundi |
| 39 | 891884 | 892081 | + | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 40 | 1264070 | 1264270 | + | NZ_CP061703.1 | Mesoflavibacter profundi |
| 41 | 4143939 | 4144142 | + | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 42 | 2738900 | 2739094 | + | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 43 | 1117701 | 1117901 | + | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 44 | 1059126 | 1059320 | + | NZ_CP031188.1 | Flavobacterium arcticum |
| 45 | 1223108 | 1223305 | + | NZ_CP039934.1 | Myroides fluvii |
| 46 | 40277 | 40471 | - | NZ_CP020822.1 | Tenacibaculum maritimum |
| 47 | 253052 | 253255 | + | NZ_CP019352.1 | Lacinutrix venerupis |
| 48 | 756261 | 756455 | - | NZ_CP029186.1 | Flavobacterium album |
| 49 | 1169438 | 1169632 | + | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 50 | 640166 | 640360 | - | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 51 | 1019894 | 1020088 | - | NZ_CP029463.1 | Flavobacterium sediminis |
| 52 | 899710 | 899904 | - | NZ_CP022378.1 | Capnocytophaga cynodegmi |
| 53 | 1876761 | 1876955 | + | NZ_CP022387.1 | Capnocytophaga stomatis |
| 54 | 2725298 | 2725492 | - | NZ_CP018155.1 | Tenacibaculum todarodis |
| 55 | 1980568 | 1980762 | - | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 56 | 717942 | 718136 | + | NZ_CP022379.1 | Capnocytophaga sputigena |
| 57 | 2869525 | 2869719 | + | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 58 | 1321571 | 1321768 | - | NZ_CP020918.1 | Flavobacterium faecale |
| 59 | 2715830 | 2716030 | + | NZ_CP017477.1 | Polaribacter vadi |
| 60 | 1107238 | 1107432 | - | NZ_CP019419.1 | Polaribacter reichenbachii |
| 61 | 2104492 | 2104686 | - | NZ_CP061813.1 | Polaribacter haliotis |
| 62 | 2198760 | 2198954 | + | NZ_CP016907.1 | Flavobacterium anhuiense |
| 63 | 2102103 | 2102297 | + | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 64 | 661142 | 661336 | - | NZ_CP029255.1 | Flavobacterium crocinum |
| 65 | 707916 | 708110 | - | NC_009441.1 | Flavobacterium johnsoniae UW101 |
| 66 | 496855 | 497049 | - | NZ_CP038810.1 | Flavobacterium sangjuense |
| 67 | 957809 | 958003 | + | NZ_CP017688.1 | Flavobacterium crassostreae |
| 68 | 2287788 | 2287982 | + | NZ_CP037933.1 | Flavobacterium nackdongense |
| 69 | 323133 | 323330 | + | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 70 | 1834103 | 1834300 | + | NZ_CP017774.1 | Flavobacterium commune |
| 71 | 271429 | 271623 | - | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 72 | 630187 | 630384 | + | NZ_CP017479.1 | Flavobacterium gilvum |
| 73 | 986298 | 986492 | + | NZ_CP029187.1 | Flavobacterium pallidum |
| 74 | 2447973 | 2448161 | - | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 75 | 968744 | 968938 | + | NZ_CP028811.1 | Flavobacterium magnum |
| 76 | 861979 | 862188 | + | NZ_CP022386.1 | Capnocytophaga gingivalis |
| 77 | 948318 | 948521 | - | NZ_CP034161.1 | Epilithonimonas vandammei |
| 78 | 3405083 | 3405286 | + | NZ_CP014337.1 | Elizabethkingia bruuniana |
| 79 | 1360038 | 1360241 | + | NZ_LT906465.1 | Chryseobacterium taklimakanense |
| 80 | 3269162 | 3269365 | - | NZ_CP015067.2 | Elizabethkingia anophelis |
| 81 | 3758471 | 3758674 | - | NZ_CP023049.2 | Chryseobacterium piperi |
| 82 | 1690007 | 1690204 | + | NZ_CP053698.1 | Empedobacter stercoris |
| 83 | 1454887 | 1455084 | - | NZ_CP013210.1 | Empedobacter brevis |
| 84 | 2759637 | 2759834 | + | NZ_CP040908.1 | Empedobacter falsenii |
| 85 | 1866714 | 1866908 | + | NZ_CP054494.1 | Flavobacterium columnare |
| 86 | 1971212 | 1971412 | - | NZ_CP034930.1 | Apibacter raozihei |
| 87 | 2336155 | 2336358 | + | NZ_CP022986.1 | Chryseobacterium camelliae |
| 88 | 1689234 | 1689437 | - | NZ_CP063145.1 | Cruoricaptor ignavus |
| 89 | 2574032 | 2574235 | - | NZ_CP015199.1 | Chryseobacterium glaciei |
| 90 | 2871622 | 2871825 | + | NZ_LR134441.1 | Kaistella antarctica |
| 91 | 3731640 | 3731843 | - | NZ_CP050995.1 | Chryseobacterium gallinarum |
| 92 | 436672 | 436875 | - | NZ_CP033914.1 | Chryseobacterium shandongense |
| 93 | 1937162 | 1937365 | - | NZ_CP033920.1 | Chryseobacterium carnipullorum |
| 94 | 5256009 | 5256212 | + | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 95 | 2937556 | 2937759 | - | NZ_LR215974.1 | Chryseobacterium taihuense |
| 96 | 689370 | 689573 | + | NZ_CP033932.1 | Chryseobacterium bernardetii |
| 97 | 3009192 | 3009395 | + | NZ_LR134289.1 | Chryseobacterium gleum |
| 98 | 1245797 | 1246000 | - | NC_017045.1 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
| 99 | 1574766 | 1574963 | - | NZ_LR134404.1 | Weeksella virosa |
| 100 | 668941 | 669144 | + | NZ_CP033924.1 | Chryseobacterium lactis |
| 101 | 1667266 | 1667469 | - | NZ_CP034159.1 | Kaistella carnis |
| 102 | 2707855 | 2708058 | + | NZ_CP033926.1 | Chryseobacterium joostei |
| 103 | 1585356 | 1585559 | - | NZ_LR134503.1 | Kaistella jeonii |
| 104 | 4129358 | 4129561 | + | NZ_CP033929.1 | Chryseobacterium indoltheticum |
| 105 | 1559153 | 1559347 | - | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 106 | 1984837 | 1985028 | + | NZ_CP030041.1 | Echinicola strongylocentroti |
| 107 | 2146004 | 2146195 | - | NZ_CP012836.1 | Algoriphagus sanaruensis |
| 108 | 618452 | 618655 | - | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 109 | 204727 | 204918 | + | NC_019904.1 | Echinicola vietnamensis DSM 17526 |
| 110 | 203188 | 203379 | + | NZ_CP040106.1 | Echinicola rosea |
| 111 | 2602597 | 2602788 | - | NC_018010.1 | Belliella baltica DSM 15883 |
| 112 | 1123565 | 1123756 | + | NZ_CP012040.1 | Cyclobacterium amurskyense |
| 113 | 1185701 | 1185892 | + | NC_015914.1 | Cyclobacterium marinum DSM 745 |
| 114 | 3772998 | 3773189 | + | NC_014759.1 | Marivirga tractuosa DSM 4126 |
| 115 | 4456608 | 4456799 | - | NZ_CP034120.1 | Glaciecola amylolytica |
| 116 | 1415628 | 1415819 | + | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 117 | 4165008 | 4165199 | - | NZ_CP032382.1 | Chryseolinea soli |
| 118 | 1742899 | 1743105 | + | NZ_CP034562.1 | Flammeovirga pectinis |
| 119 | 3352583 | 3352777 | + | NZ_CP048222.1 | Rhodocytophaga rosea |
| 120 | 4579738 | 4579929 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 121 | 3932134 | 3932325 | + | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 122 | 981693 | 981887 | - | NZ_CP050063.1 | Spirosoma aureum |
| 123 | 1764212 | 1764397 | + | NC_014655.1 | Leadbetterella byssophila DSM 17132 |
| 124 | 5218647 | 5218841 | + | NZ_CP053435.1 | Spirosoma taeanense |
| 125 | 761270 | 761461 | + | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 126 | 3325587 | 3325799 | + | NC_018018.1 | Bernardetia litoralis DSM 6794 |
| 127 | 1358088 | 1358282 | - | NZ_CP020105.1 | Spirosoma rigui |
| 128 | 3391858 | 3392043 | - | NZ_CP029480.1 | Arcticibacterium luteifluviistationis |
| 129 | 5179359 | 5179553 | + | NZ_CP014263.1 | Spirosoma montaniterrae |
| 130 | 3716261 | 3716452 | - | NZ_CP030848.1 | Sphingobacterium hotanense |
| 131 | 3926996 | 3927187 | + | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 132 | 4778983 | 4779174 | + | NZ_CP060723.1 | Pedobacter roseus |
| 133 | 6516062 | 6516256 | - | NZ_CP010429.1 | Spirosoma radiotolerans |
| 134 | 6980482 | 6980676 | - | NZ_CP025096.1 | Spirosoma pollinicola |
| 135 | 3830466 | 3830657 | - | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 136 | 610996 | 611187 | - | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 137 | 4059779 | 4059970 | + | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 138 | 5482374 | 5482565 | - | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 139 | 7779029 | 7779223 | + | NZ_CP020104.1 | Spirosoma aerolatum |
| 140 | 162237 | 162428 | + | NZ_CP049246.1 | Sphingobacterium lactis |
| 141 | 681086 | 681277 | - | NZ_LR590470.1 | Sphingobacterium daejeonense |
| 142 | 6176175 | 6176366 | - | NZ_CP032869.1 | Mucilaginibacter celer |
| 143 | 133215 | 133421 | - | NC_020510.1 | Blattabacterium cuenoti BPAA |
| 144 | 7934861 | 7935055 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 145 | 2508213 | 2508404 | - | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 146 | 5755670 | 5755864 | - | NZ_CP011390.1 | Flavisolibacter tropicus |
| 147 | 2883596 | 2883790 | + | NZ_CP048113.1 | Chitinophaga agri |
| 148 | 2181289 | 2181480 | + | NC_011026.1 | Chloroherpeton thalassium ATCC 35110 |
| 149 | 1330029 | 1330223 | - | NZ_CP010777.1 | Rufibacter radiotolerans |
| 150 | 196050 | 196244 | - | NZ_CP047897.1 | Nibribacter ruber |
| 151 | 375370 | 375561 | + | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 152 | 4024641 | 4024835 | - | NZ_CP012643.1 | Rufibacter tibetensis |
| 153 | 5013549 | 5013743 | - | NC_013037.1 | Dyadobacter fermentans DSM 18053 |
| 154 | 1847359 | 1847556 | + | NZ_CP048106.1 | Pontibacter pudoricolor |
| 155 | 2825490 | 2825684 | - | NZ_CP023777.1 | Chitinophaga caeni |
| 156 | 1384643 | 1384864 | + | NZ_CP032317.1 | Hymenobacter oligotrophus |
| 157 | 806179 | 806370 | - | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 158 | 495659 | 495841 | + | NC_016621.1 | Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu |
| 159 | 2475691 | 2475885 | + | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 160 | 3125812 | 3126003 | - | NC_015703.1 | Runella slithyformis DSM 19594 |
| 161 | 5637466 | 5637657 | - | NZ_CP054139.1 | Mucilaginibacter mali |
| 162 | 505662 | 505844 | + | NZ_CP029844.1 | Blattabacterium clevelandi |
| 163 | 991845 | 992042 | + | NZ_CP047984.1 | Pontibacter russatus |
| 164 | 333155 | 333346 | + | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 165 | 182593 | 182790 | + | NZ_CP014766.1 | Pontibacter akesuensis |
| 166 | 4198956 | 4199150 | + | NZ_CP037755.1 | Pseudocnuella soli |
| 167 | 5664936 | 5665148 | - | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 168 | 895093 | 895290 | - | NZ_CP021235.1 | Pontibacter actiniarum |
| 169 | 3440670 | 3440867 | - | NZ_CP009621.1 | Pontibacter korlensis |
| 170 | 3733711 | 3733902 | + | NZ_CP032157.1 | Paraflavitalea soli |
| 171 | 5434407 | 5434589 | + | NC_016609.1 | Niastella koreensis GR20-10 |
| 172 | 2441976 | 2442158 | - | NZ_AP023049.1 | Alistipes indistinctus |
| 173 | 575490 | 575675 | - | NZ_LR027382.1 | Alistipes megaguti |
| 174 | 1684427 | 1684621 | + | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 175 | 560442 | 560627 | + | NZ_AP019735.1 | Alistipes communis |
| 176 | 678639 | 678824 | - | NC_018011.1 | Alistipes finegoldii DSM 17242 |
| 177 | 4933730 | 4933951 | + | NZ_CP040896.1 | Hymenobacter jejuensis |
| 178 | 887759 | 887944 | - | NZ_AP019736.1 | Alistipes dispar |
| 179 | 3354568 | 3354762 | - | NZ_CP032489.1 | Arachidicoccus soli |
| 180 | 1186868 | 1187062 | - | NZ_CP042434.1 | Arachidicoccus ginsenosidivorans |
| 181 | 1966305 | 1966499 | - | NZ_AP017422.1 | Filimonas lacunae |
| 182 | 2960246 | 2960431 | - | NZ_CP041345.1 | Tenuifilum thalassicum |
| 183 | 2870716 | 2870895 | + | NC_018178.1 | Melioribacter roseus P3M-2 |
| 184 | 2447334 | 2447519 | - | NZ_CP021904.1 | Alkalitalea saponilacus |
| 185 | 354243 | 354428 | - | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 186 | 2179174 | 2179359 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 187 | 2497257 | 2497442 | + | NZ_CP027231.1 | Bacteroides zoogleoformans |
| 188 | 3495914 | 3496099 | + | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 189 | 643008 | 643193 | - | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 190 | 4576322 | 4576507 | - | NZ_LN877293.1 | Bacteroides fragilis |
| 191 | 691649 | 691834 | - | NZ_LR699004.1 | Phocaeicola dorei |
| 192 | 2290765 | 2290950 | + | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 193 | 4998737 | 4998922 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 194 | 1785592 | 1785777 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 195 | 1557973 | 1558158 | - | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 196 | 3085985 | 3086170 | - | NZ_CP069440.1 | Phocaeicola coprophilus |
| 197 | 922348 | 922533 | - | NZ_CP024727.1 | Prevotella intermedia |
| 198 | 1958454 | 1958639 | - | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 199 | 3612851 | 3613042 | + | NC_014033.1 | Prevotella ruminicola 23 |
| 200 | 3182229 | 3182414 | + | NC_015164.1 | Phocaeicola salanitronis DSM 18170 |
| 201 | 407751 | 407936 | - | NZ_CP069450.1 | Butyricimonas virosa |
| 202 | 3354483 | 3354668 | + | NZ_CP032819.1 | Butyricimonas faecalis |
| 203 | 2801617 | 2801811 | + | NZ_CP015772.1 | Niabella ginsenosidivorans |
| 204 | 82935 | 83120 | + | NZ_CP012074.1 | Prevotella fusca JCM 17724 |
| 205 | 677526 | 677708 | + | NZ_CP016953.1 | Streptococcus himalayensis |
| 206 | 875114 | 875293 | - | NC_014926.1 | Thermovibrio ammonificans HB-1 |
| 207 | 1747075 | 1747260 | - | NZ_CP023863.1 | Prevotella jejuni |
| 208 | 389608 | 389793 | + | NZ_CP013195.1 | Prevotella enoeca |
| 209 | 198640 | 198825 | + | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 210 | 408240 | 408425 | - | NZ_LR134384.1 | Prevotella oris |
| 211 | 1646701 | 1646886 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008571.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02620.19 | 0.97 | 205 | 16 | same-strand | Large ribosomal RNA subunit accumulation protein YceD |
| 2 | PF08541.12 | 0.72 | 151 | 181.0 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
| 3 | PF08545.12 | 0.72 | 151 | 181.0 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III |
| 4 | PF00364.24 | 0.69 | 145 | 1199 | same-strand | Biotin-requiring enzyme |
| 5 | PF02786.19 | 0.68 | 143 | 1779 | same-strand | Carbamoyl-phosphate synthase L chain, ATP binding domain |
| 6 | PF00289.24 | 0.66 | 140 | 1776.5 | same-strand | Biotin carboxylase, N-terminal domain |
| 7 | PF02785.21 | 0.68 | 143 | 1779 | same-strand | Biotin carboxylase C-terminal domain |
| 8 | PF02222.24 | 0.68 | 143 | 1779 | same-strand | ATP-grasp domain |
++ More..