Result : EXP00279
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00279 |
| NCBI Accession ID | NC_000913.3 |
| Organism | Escherichia coli str. K-12 substr. MG1655 |
| Left | 1020197 |
| Right | 1020241 |
| Strand | - |
| Nucleotide Sequence | ATGCCTGACGGAGTTCACACTTGTAAGTTTTCAACTACGTTGTAG |
| Sequence | MPDGVHTCKFSTTL |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 30904393 27013550 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 14 |
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| Conservation Analysis |
No. of Species: 56
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1031841 | 1031885 | - | NZ_AP014857.1 | Escherichia albertii |
| 2 | 1149669 | 1149713 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 3 | 1948934 | 1948978 | + | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 4 | 1020197 | 1020241 | - | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 5 | 1007272 | 1007316 | - | NC_004337.2 | Shigella flexneri 2a str. 301 |
| 6 | 1687021 | 1687065 | - | NZ_LR134340.1 | Escherichia marmotae |
| 7 | 2731210 | 2731254 | + | NZ_CP061527.1 | Shigella dysenteriae |
| 8 | 3939712 | 3939756 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 9 | 4521217 | 4521261 | - | NZ_CP033744.1 | Citrobacter freundii |
| 10 | 594442 | 594486 | + | NZ_CP044098.1 | Citrobacter portucalensis |
| 11 | 1589066 | 1589110 | - | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 12 | 3410169 | 3410213 | - | NZ_CP042941.1 | Atlantibacter hermannii |
| 13 | 1589817 | 1589861 | - | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 14 | 2554445 | 2554489 | + | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 15 | 1804836 | 1804880 | + | NZ_CP027107.1 | Cronobacter sakazakii |
| 16 | 1343271 | 1343315 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 17 | 1254451 | 1254495 | + | NZ_CP045300.1 | Kosakonia arachidis |
| 18 | 1750499 | 1750543 | - | NZ_CP015113.1 | Kosakonia radicincitans |
| 19 | 3440314 | 3440358 | + | NZ_CP014007.2 | Kosakonia oryzae |
| 20 | 1723326 | 1723370 | - | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 21 | 3148285 | 3148329 | + | NZ_CP013990.1 | Leclercia adecarboxylata |
| 22 | 1847173 | 1847217 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 23 | 819080 | 819124 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 24 | 1659522 | 1659566 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 25 | 916396 | 916440 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 26 | 1613890 | 1613934 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 27 | 1634770 | 1634814 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 28 | 4177244 | 4177288 | - | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 29 | 3819632 | 3819676 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 30 | 3312280 | 3312324 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 31 | 86833 | 86877 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 32 | 2886319 | 2886363 | + | NZ_AP023184.1 | Buttiauxella agrestis |
| 33 | 3006465 | 3006509 | + | NZ_LR134201.1 | Cedecea lapagei |
| 34 | 3227369 | 3227413 | + | NZ_CP023525.1 | Cedecea neteri |
| 35 | 3725542 | 3725586 | + | NZ_CP050508.1 | Raoultella terrigena |
| 36 | 2689011 | 2689055 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 37 | 1696447 | 1696491 | + | NZ_CP038469.1 | Citrobacter tructae |
| 38 | 2968396 | 2968440 | + | NZ_CP035129.1 | Kosakonia cowanii |
| 39 | 1633867 | 1633911 | - | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 40 | 2445308 | 2445352 | + | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 41 | 3984863 | 3984907 | + | NZ_CP060111.1 | Klebsiella michiganensis |
| 42 | 3607369 | 3607413 | + | NZ_CP046672.1 | Raoultella ornithinolytica |
| 43 | 3637561 | 3637605 | - | NZ_CP026047.1 | Raoultella planticola |
| 44 | 3437415 | 3437459 | + | NZ_CP041247.1 | Raoultella electrica |
| 45 | 1823270 | 1823314 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 46 | 2866448 | 2866492 | + | NZ_CP054058.1 | Scandinavium goeteborgense |
| 47 | 1604416 | 1604460 | - | NC_015968.1 | Enterobacter soli |
| 48 | 3801860 | 3801904 | + | NZ_CP036175.1 | Klebsiella huaxiensis |
| 49 | 1131533 | 1131577 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
| 50 | 1162149 | 1162193 | - | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 51 | 3550616 | 3550660 | - | NZ_CP053416.1 | Salmonella bongori |
| 52 | 1732565 | 1732609 | - | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 53 | 1650029 | 1650073 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 54 | 3584716 | 3584760 | + | NZ_CP054254.1 | Klebsiella variicola |
| 55 | 1937525 | 1937569 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 56 | 2926438 | 2926482 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
| 57 | 3374014 | 3374058 | + | NZ_LR134475.1 | Klebsiella aerogenes |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF07977.15 | 1.0 | 56 | 3744 | same-strand | FabA-like domain |
| 2 | PF06303.14 | 1.0 | 56 | 1281 | opposite-strand | MatP N-terminal domain |
| 3 | PF17414.4 | 0.98 | 55 | 1281.0 | opposite-strand | MatP C-terminal ribbon-helix-helix domain |
| 4 | PF01389.19 | 1.0 | 56 | 144 | same-strand | OmpA-like transmembrane domain |
| 5 | PF00691.22 | 1.0 | 56 | 144 | same-strand | OmpA family |
| 6 | PF13505.8 | 1.0 | 56 | 144 | same-strand | Outer membrane protein beta-barrel domain |
| 7 | PF03846.16 | 0.88 | 49 | 168.5 | same-strand | Cell division inhibitor SulA |
| 8 | PF04994.15 | 0.98 | 55 | 895.0 | opposite-strand | TfoX C-terminal domain |
| 9 | PF04993.15 | 1.0 | 56 | 895 | opposite-strand | TfoX N-terminal domain |
| 10 | PF12805.9 | 1.0 | 56 | 1498 | same-strand | FUSC-like inner membrane protein yccS |
| 11 | PF13515.8 | 1.0 | 56 | 1498 | same-strand | Fusaric acid resistance protein-like |
| 12 | PF03733.15 | 0.96 | 54 | 3659 | same-strand | Inner membrane component domain |
| 13 | PF12462.10 | 0.96 | 54 | 4229 | opposite-strand | DNA helicase IV / RNA helicase N terminal |
| 14 | PF00580.23 | 0.96 | 54 | 4229 | opposite-strand | UvrD/REP helicase N-terminal domain |
| 15 | PF13245.8 | 0.96 | 54 | 4229 | opposite-strand | AAA domain |
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