* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04997.14
|
1.0
|
2
|
869
|
opposite-strand
|
RNA polymerase Rpb1, domain 1
|
2
|
PF04998.19
|
1.0
|
2
|
869
|
opposite-strand
|
RNA polymerase Rpb1, domain 5
|
3
|
PF04983.20
|
1.0
|
2
|
869
|
opposite-strand
|
RNA polymerase Rpb1, domain 3
|
4
|
PF05000.19
|
1.0
|
2
|
869
|
opposite-strand
|
RNA polymerase Rpb1, domain 4
|
5
|
PF06968.15
|
1.0
|
2
|
237
|
same-strand
|
Biotin and Thiamin Synthesis associated domain
|
6
|
PF04055.23
|
1.0
|
2
|
237
|
same-strand
|
Radical SAM superfamily
|
7
|
PF05690.16
|
1.0
|
2
|
1367
|
same-strand
|
Thiazole biosynthesis protein ThiG
|
8
|
PF02597.22
|
1.0
|
2
|
2139
|
same-strand
|
ThiS family
|
9
|
PF00899.23
|
1.0
|
2
|
2323
|
same-strand
|
ThiF family
|
10
|
PF13241.8
|
1.0
|
2
|
2323
|
same-strand
|
Putative NAD(P)-binding
|
11
|
PF02581.19
|
1.0
|
2
|
3071
|
same-strand
|
Thiamine monophosphate synthase
|
++ More..