* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF06804.13
|
1.0
|
3
|
2149.0
|
same-strand
|
NlpB/DapX lipoprotein
|
2
|
PF00701.24
|
1.0
|
3
|
1254.0
|
same-strand
|
Dihydrodipicolinate synthetase family
|
3
|
PF13740.8
|
1.0
|
3
|
536.0
|
opposite-strand
|
ACT domain
|
4
|
PF01842.27
|
1.0
|
3
|
536.0
|
opposite-strand
|
ACT domain
|
5
|
PF00578.23
|
1.0
|
3
|
66.0
|
opposite-strand
|
AhpC/TSA family
|
6
|
PF08534.12
|
1.0
|
3
|
66.0
|
opposite-strand
|
Redoxin
|
7
|
PF02630.16
|
1.0
|
3
|
66.0
|
opposite-strand
|
SCO1/SenC
|
8
|
PF12838.9
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S dicluster domain
|
9
|
PF00037.29
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S binding domain
|
10
|
PF13187.8
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S dicluster domain
|
11
|
PF12837.9
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S binding domain
|
12
|
PF13237.8
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S dicluster domain
|
13
|
PF14697.8
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S dicluster domain
|
14
|
PF12797.9
|
1.0
|
3
|
122.0
|
opposite-strand
|
4Fe-4S binding domain
|
15
|
PF00361.22
|
1.0
|
3
|
2235.0
|
opposite-strand
|
Proton-conducting membrane transporter
|
16
|
PF00146.23
|
1.0
|
3
|
2768.0
|
opposite-strand
|
NADH dehydrogenase
|
17
|
PF00662.22
|
1.0
|
3
|
3732.0
|
opposite-strand
|
NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
|
++ More..