* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00528.24
|
1.0
|
7
|
702
|
same-strand
|
Binding-protein-dependent transport system inner membrane component
|
2
|
PF00005.29
|
1.0
|
7
|
-56.0
|
same-strand
|
ABC transporter
|
3
|
PF00132.26
|
0.86
|
6
|
5879
|
same-strand
|
Bacterial transferase hexapeptide (six repeats)
|
4
|
PF14602.8
|
0.71
|
5
|
5849.5
|
same-strand
|
Hexapeptide repeat of succinyl-transferase
|
5
|
PF07369.13
|
0.86
|
6
|
6409
|
opposite-strand
|
Protein of unknown function (DUF1488)
|
6
|
PF08501.13
|
0.86
|
6
|
6663
|
opposite-strand
|
Shikimate dehydrogenase substrate binding domain
|
7
|
PF18317.3
|
0.86
|
6
|
6663
|
opposite-strand
|
Shikimate 5'-dehydrogenase C-terminal domain
|
8
|
PF00497.22
|
0.86
|
6
|
3064.0
|
same-strand
|
Bacterial extracellular solute-binding proteins, family 3
|
++ More..