* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00440.25
|
1.0
|
2
|
2732.5
|
same-strand
|
Bacterial regulatory proteins, tetR family
|
2
|
PF01138.23
|
1.0
|
2
|
1273.0
|
opposite-strand
|
3' exoribonuclease family, domain 1
|
3
|
PF03725.17
|
1.0
|
2
|
1273.0
|
opposite-strand
|
3' exoribonuclease family, domain 2
|
4
|
PF03755.15
|
1.0
|
2
|
283.0
|
same-strand
|
YicC-like family, N-terminal region
|
5
|
PF08340.13
|
1.0
|
2
|
283.0
|
same-strand
|
Domain of unknown function (DUF1732)
|
6
|
PF02498.19
|
1.0
|
2
|
-89.0
|
same-strand
|
BRO family, N-terminal domain
|
7
|
PF03458.15
|
1.0
|
2
|
963.5
|
same-strand
|
Glycine transporter
|
8
|
PF03120.18
|
1.0
|
2
|
1577.5
|
opposite-strand
|
NAD-dependent DNA ligase OB-fold domain
|
9
|
PF00625.23
|
1.0
|
2
|
3517.5
|
same-strand
|
Guanylate kinase
|
10
|
PF01192.24
|
1.0
|
2
|
4195.5
|
same-strand
|
RNA polymerase Rpb6
|
11
|
PF13328.8
|
1.0
|
2
|
4489.5
|
same-strand
|
HD domain
|
12
|
PF04607.19
|
1.0
|
2
|
4489.5
|
same-strand
|
Region found in RelA / SpoT proteins
|
13
|
PF02824.23
|
1.0
|
2
|
4489.5
|
same-strand
|
TGS domain
|
14
|
PF13291.8
|
1.0
|
2
|
4489.5
|
same-strand
|
ACT domain
|
15
|
PF01966.24
|
1.0
|
2
|
4489.5
|
same-strand
|
HD domain
|
++ More..