* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061527.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF17827.3
|
1.0
|
2
|
2585
|
same-strand
|
PrmC N-terminal domain
|
2
|
PF13649.8
|
1.0
|
2
|
2585
|
same-strand
|
Methyltransferase domain
|
3
|
PF04247.14
|
1.0
|
2
|
2196.0
|
same-strand
|
Invasion gene expression up-regulator, SirB
|
4
|
PF13369.8
|
1.0
|
2
|
1383.0
|
same-strand
|
Transglutaminase-like superfamily
|
5
|
PF13371.8
|
1.0
|
2
|
1383.0
|
same-strand
|
Tetratricopeptide repeat
|
6
|
PF00793.22
|
1.0
|
2
|
493.0
|
same-strand
|
DAHP synthetase I family
|
7
|
PF13940.8
|
1.0
|
2
|
232.5
|
opposite-strand
|
Toxin Ldr, type I toxin-antitoxin system
|
8
|
PF01699.26
|
1.0
|
2
|
526.5
|
opposite-strand
|
Sodium/calcium exchanger protein
|
9
|
PF06150.14
|
1.0
|
2
|
2163.5
|
same-strand
|
ChaB
|
10
|
PF04752.14
|
1.0
|
2
|
2530.5
|
same-strand
|
ChaC-like protein
|
11
|
PF02635.17
|
1.0
|
2
|
3023
|
opposite-strand
|
DsrE/DsrF-like family
|
++ More..