* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03061.24
|
1.0
|
5
|
2873.0
|
same-strand
|
Thioesterase superfamily
|
2
|
PF13279.8
|
1.0
|
5
|
2873.0
|
same-strand
|
Thioesterase-like superfamily
|
3
|
PF01618.18
|
1.0
|
5
|
2184.0
|
same-strand
|
MotA/TolQ/ExbB proton channel family
|
4
|
PF02472.18
|
1.0
|
5
|
1752.0
|
same-strand
|
Biopolymer transport protein ExbD/TolR
|
5
|
PF06519.13
|
0.8
|
4
|
470
|
same-strand
|
TolA C-terminal
|
6
|
PF07676.14
|
1.0
|
5
|
-71.0
|
same-strand
|
WD40-like Beta Propeller Repeat
|
7
|
PF04052.15
|
1.0
|
5
|
-71.0
|
same-strand
|
TolB amino-terminal domain
|
8
|
PF00691.22
|
1.0
|
5
|
919.0
|
same-strand
|
OmpA family
|
9
|
PF13174.8
|
1.0
|
5
|
1450.0
|
same-strand
|
Tetratricopeptide repeat
|
10
|
PF16331.7
|
1.0
|
5
|
1450.0
|
same-strand
|
TolA binding protein trimerisation
|
11
|
PF13432.8
|
1.0
|
5
|
1450.0
|
same-strand
|
Tetratricopeptide repeat
|
12
|
PF02445.18
|
1.0
|
5
|
3434.5
|
same-strand
|
Quinolinate synthetase A protein
|
13
|
PF04973.14
|
1.0
|
5
|
4509.0
|
same-strand
|
Nicotinamide mononucleotide transporter
|
14
|
PF09600.12
|
0.6
|
3
|
3430
|
same-strand
|
Cyd operon protein YbgE (Cyd oper YbgE)
|
++ More..