* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00213.20
|
1.0
|
3
|
2359.0
|
opposite-strand
|
ATP synthase delta (OSCP) subunit
|
2
|
PF00430.20
|
1.0
|
3
|
1874.0
|
opposite-strand
|
ATP synthase B/B' CF(0)
|
3
|
PF00137.23
|
1.0
|
3
|
1573.0
|
opposite-strand
|
ATP synthase subunit C
|
4
|
PF00119.22
|
1.0
|
3
|
711.0
|
opposite-strand
|
ATP synthase A chain
|
5
|
PF03899.17
|
1.0
|
3
|
322.0
|
opposite-strand
|
ATP synthase I chain
|
6
|
PF02527.17
|
1.0
|
3
|
254.0
|
opposite-strand
|
rRNA small subunit methyltransferase G
|
7
|
PF01134.24
|
1.0
|
3
|
941.0
|
opposite-strand
|
Glucose inhibited division protein A
|
8
|
PF13932.8
|
1.0
|
3
|
941.0
|
opposite-strand
|
tRNA modifying enzyme MnmG/GidA C-terminal domain
|
9
|
PF00258.27
|
1.0
|
3
|
3209.0
|
opposite-strand
|
Flavodoxin
|
10
|
PF01037.23
|
1.0
|
3
|
3742.0
|
opposite-strand
|
Lrp/AsnC ligand binding domain
|
11
|
PF13412.8
|
1.0
|
3
|
3742.0
|
opposite-strand
|
Winged helix-turn-helix DNA-binding
|
12
|
PF13404.8
|
1.0
|
3
|
3742.0
|
opposite-strand
|
AsnC-type helix-turn-helix domain
|
13
|
PF03590.17
|
1.0
|
3
|
4352.0
|
same-strand
|
Aspartate-ammonia ligase
|
++ More..