* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP014857.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00691.22
|
1.0
|
6
|
1718
|
same-strand
|
OmpA family
|
2
|
PF00817.22
|
1.0
|
6
|
527
|
same-strand
|
impB/mucB/samB family
|
3
|
PF11799.10
|
1.0
|
6
|
527
|
same-strand
|
impB/mucB/samB family C-terminal domain
|
4
|
PF11798.10
|
1.0
|
6
|
527
|
same-strand
|
IMS family HHH motif
|
5
|
PF13673.9
|
0.83
|
5
|
78.0
|
same-strand
|
Acetyltransferase (GNAT) domain
|
6
|
PF13508.9
|
0.83
|
5
|
78.0
|
same-strand
|
Acetyltransferase (GNAT) domain
|
7
|
PF01546.30
|
1.0
|
6
|
1897
|
opposite-strand
|
Peptidase family M20/M25/M40
|
8
|
PF07687.16
|
1.0
|
6
|
1897
|
opposite-strand
|
Peptidase dimerisation domain
|
9
|
PF00472.22
|
0.67
|
4
|
1227.5
|
same-strand
|
RF-1 domain
|
++ More..