Result : B0TZF1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L25 |
| NCBI Accession ID | CP000937.1 |
| Organism | Francisella philomiragia subsp. philomiragia (strain ATCC 25017 / FSC 153 / O#319-036) |
| Left | 1711557 |
| Right | 1711847 |
| Strand | + |
| Nucleotide Sequence | ATGGCAAATTTTAGTTTGAAAGCAGTTAAAAGAGAAGATTTAGGATCTGGTGCGAGCCGCCGTCTAAGAAGAGCTGGTAAAATCCCAGCTGTTATATATGGTGGTGACAAGGAAGCAGTATCTATAGTATTAGATCACGATAAAGTTTTACACTCTACAGAAGATAAAGCATTCTTCTCAAGTGAAATCACTTTAGAGATTGATGGTCAAGAAGAAAGAGTAATCATCAAAGCACTACAAAGACATCCATATAAAGTTAAGCTTGTTCACGCTGACTTCATGAGAGTATAA |
| Sequence | MANFSLKAVKREDLGSGASRRLRRAGKIPAVIYGGDKEAVSIVLDHDKVLHSTEDKAFFSSEITLEIDGQEERVIIKALQRHPYKVKLVHADFMRV |
| Source of smORF | Swiss-Prot |
| Function | This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. {ECO:0000255|HAMAP-Rule:MF_01336}. |
| Pubmed ID | |
| Domain | CDD:412568 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B0TZF1 |
| ORF Length (Amino Acid) | 96 |
++ More..
| Conservation Analysis |
No. of Species: 151
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1562067 | 1562357 | - | NC_015696.1 | Francisella salina |
| 2 | 973766 | 974056 | - | NZ_CP043552.1 | Francisella marina |
| 3 | 824109 | 824399 | + | NC_023029.1 | Francisella orientalis LADL--07-285A |
| 4 | 1045309 | 1045599 | - | NZ_CP022375.1 | Francisella opportunistica |
| 5 | 676730 | 677020 | + | NC_017449.1 | Francisella hispaniensis |
| 6 | 1279709 | 1279999 | - | NZ_CP022132.1 | Francisella halioticida |
| 7 | 886199 | 886489 | + | NZ_CP016796.1 | Francisella uliginis |
| 8 | 833469 | 833759 | - | NZ_CP012505.1 | Francisella persica ATCC VR-331 |
| 9 | 1220306 | 1220596 | - | NZ_CP010427.1 | Allofrancisella guangzhouensis |
| 10 | 1003052 | 1003342 | - | NZ_CP038241.1 | Allofrancisella inopinata |
| 11 | 1401333 | 1401623 | - | NZ_CP021781.1 | Francisella adeliensis |
| 12 | 928677 | 928967 | - | NZ_CP038017.1 | Allofrancisella frigidaquae |
| 13 | 1448887 | 1449177 | - | NZ_CP009654.1 | Francisella frigiditurris |
| 14 | 1600253 | 1600540 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 15 | 2368323 | 2368610 | + | NZ_AP022188.1 | Aeromonas media |
| 16 | 801128 | 801415 | + | NZ_CP051180.1 | Ferrimonas lipolytica |
| 17 | 3700383 | 3700670 | + | NZ_CP017707.1 | Chromobacterium vaccinii |
| 18 | 4190103 | 4190390 | + | NZ_CP043473.1 | Chromobacterium paludis |
| 19 | 1898317 | 1898604 | - | NC_012691.1 | Tolumonas auensis DSM 9187 |
| 20 | 4381758 | 4382045 | - | NZ_AP019312.1 | Chromobacterium haemolyticum |
| 21 | 2363112 | 2363399 | + | NZ_CP029495.1 | Chromobacterium phragmitis |
| 22 | 3405583 | 3405867 | + | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 23 | 4387847 | 4388134 | - | NC_005085.1 | Chromobacterium violaceum ATCC 12472 |
| 24 | 4701630 | 4701914 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 25 | 1256867 | 1257151 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 26 | 1887584 | 1887868 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 27 | 3921400 | 3921684 | - | NZ_CP011104.1 | Photorhabdus thracensis |
| 28 | 3722886 | 3723173 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 29 | 2498714 | 2498998 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 30 | 2231463 | 2231750 | + | NZ_LR134376.1 | Aeromonas encheleia |
| 31 | 521803 | 522087 | + | NZ_CP007445.1 | Gilliamella apicola |
| 32 | 2835958 | 2836245 | - | NZ_LS483250.1 | Moritella yayanosii |
| 33 | 1696137 | 1696388 | + | NZ_CP040449.1 | Aeromonas simiae |
| 34 | 1556759 | 1557043 | - | NZ_CP071320.1 | Serratia ureilytica |
| 35 | 1384209 | 1384493 | - | NZ_LR134201.1 | Cedecea lapagei |
| 36 | 1421302 | 1421586 | - | NZ_CP023525.1 | Cedecea neteri |
| 37 | 965122 | 965409 | - | NZ_CP006954.1 | Bibersteinia trehalosi USDA-ARS-USMARC-188 |
| 38 | 3519589 | 3519873 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 39 | 1859373 | 1859660 | - | NZ_CP015029.1 | Frederiksenia canicola |
| 40 | 2978086 | 2978370 | - | NZ_CP019706.1 | Pantoea alhagi |
| 41 | 531631 | 531921 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 42 | 1252697 | 1252987 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 43 | 2896808 | 2897098 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 44 | 1057134 | 1057424 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 45 | 1027540 | 1027827 | - | NZ_CP044060.1 | Aeromonas veronii |
| 46 | 658373 | 658660 | - | NC_011852.1 | Glaesserella parasuis SH0165 |
| 47 | 1255133 | 1255420 | - | NZ_CP065745.1 | Aeromonas allosaccharophila |
| 48 | 852448 | 852729 | - | NZ_CP060401.1 | Xenorhabdus nematophila |
| 49 | 1432825 | 1433109 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 50 | 575407 | 575694 | + | NZ_CP030753.1 | Actinobacillus pleuropneumoniae |
| 51 | 2826685 | 2826969 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 52 | 1441090 | 1441377 | + | NZ_LS483443.1 | Aggregatibacter segnis ATCC 33393 |
| 53 | 2122633 | 2122917 | + | NZ_CP028271.1 | Mixta intestinalis |
| 54 | 3624176 | 3624460 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 55 | 1422257 | 1422544 | - | NZ_CP016180.1 | Pasteurella skyensis |
| 56 | 1670064 | 1670345 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 57 | 1305583 | 1305870 | - | NZ_CP051883.1 | Aeromonas salmonicida |
| 58 | 1281620 | 1281904 | + | NZ_CP049115.1 | Pantoea stewartii |
| 59 | 1266544 | 1266807 | + | NZ_LR134167.1 | Avibacterium volantium |
| 60 | 2877290 | 2877574 | + | NZ_CP061511.1 | Mixta calida |
| 61 | 2869381 | 2869671 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 62 | 2451934 | 2452221 | - | NZ_CP050851.1 | Aeromonas hydrophila |
| 63 | 2993403 | 2993693 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 64 | 1288781 | 1289068 | - | NZ_LS483429.1 | Haemophilus aegyptius |
| 65 | 1753856 | 1754143 | + | NZ_CP012621.1 | Zobellella denitrificans |
| 66 | 969774 | 970061 | - | NZ_CP007715.1 | Actinobacillus equuli subsp. equuli |
| 67 | 924112 | 924399 | - | NZ_CP009159.1 | Actinobacillus suis ATCC 33415 |
| 68 | 1580783 | 1581067 | - | NC_017554.1 | Pantoea ananatis PA13 |
| 69 | 742417 | 742704 | - | NZ_CP015031.1 | Basfia succiniciproducens |
| 70 | 1101834 | 1102121 | - | NC_006300.1 | [Mannheimia] succiniciproducens MBEL55E |
| 71 | 212825 | 213112 | + | NZ_CP040863.1 | Rodentibacter heylii |
| 72 | 3530439 | 3530723 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 73 | 3611812 | 3612096 | + | NZ_LR134494.1 | Serratia quinivorans |
| 74 | 1703151 | 1703438 | + | NZ_LR134510.1 | Actinobacillus delphinicola |
| 75 | 143806 | 144093 | - | NZ_CP021377.1 | Oceanisphaera profunda |
| 76 | 3569460 | 3569744 | + | NZ_LT906479.1 | Serratia ficaria |
| 77 | 2886631 | 2886915 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 78 | 2685984 | 2686265 | + | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 79 | 1790609 | 1790890 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 80 | 3112618 | 3112902 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 81 | 2373768 | 2374052 | + | NC_013961.1 | Erwinia amylovora CFBP1430 |
| 82 | 1904200 | 1904487 | - | NZ_CP029206.1 | Actinobacillus porcitonsillarum |
| 83 | 1398838 | 1399125 | + | NZ_CP046531.1 | Mannheimia ovis |
| 84 | 2001922 | 2002206 | - | NZ_CP065044.1 | Pectobacterium aroidearum |
| 85 | 1624108 | 1624395 | + | NZ_CP009610.1 | Haemophilus influenzae |
| 86 | 3709034 | 3709318 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 87 | 1589945 | 1590232 | + | NZ_LR134327.1 | Aggregatibacter aphrophilus ATCC 33389 |
| 88 | 1692314 | 1692601 | - | NZ_CP055305.1 | Mannheimia pernigra |
| 89 | 1502781 | 1503065 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 90 | 1264415 | 1264702 | - | NZ_LS483458.1 | Haemophilus haemolyticus |
| 91 | 1592515 | 1592799 | - | NZ_CP054254.1 | Klebsiella variicola |
| 92 | 2026957 | 2027235 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 93 | 1264085 | 1264366 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 94 | 1656861 | 1657145 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 95 | 2847285 | 2847566 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 96 | 1528348 | 1528632 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 97 | 2853707 | 2853991 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 98 | 1587261 | 1587545 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 99 | 3533730 | 3534014 | - | NZ_CP047495.1 | Pectobacterium brasiliense |
| 100 | 2886480 | 2886764 | + | NZ_CP051652.1 | Pectobacterium carotovorum |
| 101 | 2070119 | 2070403 | + | NZ_CP028926.1 | Pasteurella multocida |
| 102 | 1569674 | 1569958 | - | NZ_CP041247.1 | Raoultella electrica |
| 103 | 1782491 | 1782775 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 104 | 2002493 | 2002777 | - | NZ_CP009125.1 | Pectobacterium atrosepticum |
| 105 | 1571475 | 1571762 | + | NZ_LT906463.1 | Haemophilus pittmaniae |
| 106 | 1127471 | 1127758 | + | NZ_CP018804.1 | Histophilus somni |
| 107 | 2992022 | 2992306 | + | NZ_CP034938.1 | Pectobacterium odoriferum |
| 108 | 2288536 | 2288820 | + | NZ_CP034035.1 | Brenneria rubrifaciens |
| 109 | 1994715 | 1995002 | - | NZ_CP031560.1 | Dickeya dianthicola |
| 110 | 1937103 | 1937387 | - | NZ_CP038498.1 | Pectobacterium punjabense |
| 111 | 736783 | 737067 | - | NZ_CP017482.1 | Pectobacterium polaris |
| 112 | 2089319 | 2089603 | + | NZ_CP015749.1 | Pectobacterium parmentieri |
| 113 | 3682964 | 3683248 | - | NZ_CP015750.1 | Pectobacterium wasabiae CFBP 3304 |
| 114 | 806977 | 807261 | - | NZ_LT906448.1 | Pasteurella dagmatis |
| 115 | 1260198 | 1260476 | - | NZ_CP022355.1 | Paraphotobacterium marinum |
| 116 | 1148866 | 1149150 | + | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 117 | 3002033 | 3002317 | + | NZ_LR134373.1 | Yersinia pseudotuberculosis |
| 118 | 1688255 | 1688539 | - | NZ_CP043727.1 | Yersinia canariae |
| 119 | 3248181 | 3248465 | - | NZ_CP007230.1 | Yersinia similis |
| 120 | 2962738 | 2963022 | + | NZ_CP046293.1 | Yersinia intermedia |
| 121 | 1268508 | 1268792 | + | NZ_CP009787.1 | Yersinia rohdei |
| 122 | 4163378 | 4163662 | + | NZ_CP054043.1 | Yersinia mollaretii ATCC 43969 |
| 123 | 1066835 | 1067113 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 124 | 1170016 | 1170300 | - | NZ_CP032487.1 | Yersinia hibernica |
| 125 | 1595733 | 1596029 | - | NZ_CP012808.1 | Acinetobacter equi |
| 126 | 1849661 | 1849939 | + | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 127 | 1256551 | 1256829 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 128 | 1982239 | 1982517 | + | NZ_CP071325.1 | Photobacterium ganghwense |
| 129 | 1739060 | 1739338 | - | NZ_CP046268.1 | Vibrio spartinae |
| 130 | 2466545 | 2466832 | + | NZ_CP042220.2 | Dickeya poaceiphila |
| 131 | 1071666 | 1071962 | - | NZ_CP049801.1 | Acinetobacter shaoyimingii |
| 132 | 1305308 | 1305586 | - | NZ_CP033078.1 | Vibrio zhugei |
| 133 | 1623803 | 1624081 | - | NZ_CP009467.1 | Vibrio harveyi |
| 134 | 438294 | 438572 | + | NZ_CP019959.1 | Vibrio owensii |
| 135 | 2000127 | 2000414 | - | NZ_LT615367.1 | Dickeya aquatica |
| 136 | 1316513 | 1316791 | + | NZ_CP035688.1 | Vibrio metoecus |
| 137 | 1991715 | 1991993 | + | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 138 | 1621438 | 1621716 | + | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 139 | 2175005 | 2175289 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 140 | 1274624 | 1274902 | - | NZ_CP030788.1 | Vibrio campbellii |
| 141 | 808631 | 808909 | + | NZ_CP025792.1 | Vibrio jasicida 090810c |
| 142 | 1640712 | 1640990 | + | NZ_CP009977.1 | Vibrio natriegens NBRC 15636 = ATCC 14048 = DSM 759 |
| 143 | 2414027 | 2414305 | + | NC_013456.1 | Vibrio antiquarius |
| 144 | 2497094 | 2497372 | + | NZ_CP005974.1 | Photobacterium gaetbulicola Gung47 |
| 145 | 818994 | 819278 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 146 | 2954940 | 2955218 | + | NZ_CP014056.2 | Grimontia hollisae |
| 147 | 1458621 | 1458899 | - | NZ_AP014635.1 | Vibrio tritonius |
| 148 | 947460 | 947738 | + | NZ_LT960611.1 | Vibrio tapetis subsp. tapetis |
| 149 | 2710704 | 2710982 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 150 | 2012877 | 2013155 | + | NC_011753.2 | Vibrio atlanticus |
| 151 | 2049715 | 2049993 | + | NZ_CP039700.1 | Vibrio cyclitrophicus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP022188.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00271.33 | 0.61 | 92 | 162.5 | same-strand | Helicase conserved C-terminal domain |
| 2 | PF00270.31 | 0.61 | 92 | 162.5 | same-strand | DEAD/DEAH box helicase |
++ More..