* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00005.29
|
1.0
|
7
|
4266
|
opposite-strand
|
ABC transporter
|
2
|
PF08352.14
|
1.0
|
7
|
4266
|
opposite-strand
|
Oligopeptide/dipeptide transporter, C-terminal region
|
3
|
PF02463.21
|
1.0
|
7
|
4122.5
|
opposite-strand
|
RecF/RecN/SMC N terminal domain
|
4
|
PF00528.24
|
1.0
|
7
|
2759.5
|
opposite-strand
|
Binding-protein-dependent transport system inner membrane component
|
5
|
PF12911.9
|
1.0
|
7
|
3209.5
|
opposite-strand
|
N-terminal TM domain of oligopeptide transport permease C
|
6
|
PF00496.24
|
1.0
|
7
|
409.0
|
opposite-strand
|
Bacterial extracellular solute-binding proteins, family 5 Middle
|
7
|
PF00884.25
|
0.86
|
6
|
584
|
opposite-strand
|
Sulfatase
|
8
|
PF03352.15
|
0.86
|
6
|
4884.5
|
same-strand
|
Methyladenine glycosylase
|
++ More..