Result : B0TJ19
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Sec-independent protein translocase protein TatA |
| NCBI Accession ID | CP000931.1 |
| Organism | Shewanella halifaxensis (strain HAW-EB4) |
| Left | 4706150 |
| Right | 4706437 |
| Strand | + |
| Nucleotide Sequence | ATGGGTGGCATTAGTATTTGGCAACTTCTTATCATTGCTTTAATTGTCGTATTATTGTTTGGAACTAAGAAGTTACGCTCACTAGGCGGCGATTTAGGCGGTGCTGTTAAAGGCTTTAAGAACGCCATGACTTCTGAAGAAGATAAGAAAGCTTTAGAAGATAACGCAGCCGACAAACCAGCTGCAGACGCGGCAAAAGTGACAGAAACAGCAAAAGTTGCAGAAACTGCACCTGTTGCAGAGACAGCCGAAAAAAAGGCTGAGTCTAAAGGCAAAGAACAGGCGTAA |
| Sequence | MGGISIWQLLIIALIVVLLFGTKKLRSLGGDLGGAVKGFKNAMTSEEDKKALEDNAADKPAADAAKVTETAKVAETAPVAETAEKKAESKGKEQA |
| Source of smORF | Swiss-Prot |
| Function | Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. {ECO:0000255|HAMAP-Rule:MF_00236}. |
| Pubmed ID | |
| Domain | CDD:294511 |
| Functional Category | Others |
| Uniprot ID | B0TJ19 |
| ORF Length (Amino Acid) | 95 |
++ More..
| Conservation Analysis |
No. of Species: 129
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4706150 | 4706437 | + | NC_010334.1 | Shewanella halifaxensis HAW-EB4 |
| 2 | 4610258 | 4610527 | + | NC_009901.1 | Shewanella pealeana ATCC 700345 |
| 3 | 469716 | 469955 | - | NC_011566.1 | Shewanella piezotolerans WP3 |
| 4 | 463499 | 463756 | - | NZ_CP022358.1 | Shewanella bicestrii |
| 5 | 602977 | 603222 | - | NZ_CP046378.1 | Shewanella algae |
| 6 | 3774818 | 3775048 | + | NZ_CP022272.1 | Shewanella marisflavi |
| 7 | 4025915 | 4026145 | + | NC_009092.1 | Shewanella loihica PV-4 |
| 8 | 492787 | 493026 | - | NC_016901.1 | Shewanella baltica OS678 |
| 9 | 739718 | 739969 | - | NC_010506.1 | Shewanella woodyi ATCC 51908 |
| 10 | 5015224 | 5015460 | + | NC_009831.1 | Shewanella sediminis HAW-EB3 |
| 11 | 3136145 | 3136375 | - | NZ_CP036200.1 | Shewanella maritima |
| 12 | 538716 | 538961 | - | NC_008345.1 | Shewanella frigidimarina NCIMB 400 |
| 13 | 4317655 | 4317894 | + | NC_014012.1 | Shewanella violacea DSS12 |
| 14 | 4408571 | 4408810 | + | NZ_CP020472.1 | Shewanella japonica |
| 15 | 3490731 | 3490970 | + | NZ_CP014782.1 | Shewanella psychrophila |
| 16 | 880560 | 880799 | - | NZ_CP034015.1 | Shewanella livingstonensis |
| 17 | 3703913 | 3704146 | + | NZ_CP069213.1 | Shewanella litorisediminis |
| 18 | 2665446 | 2665685 | + | NZ_CP041783.1 | Shewanella donghaensis |
| 19 | 516733 | 516984 | - | NZ_CP041036.1 | Shewanella polaris |
| 20 | 4007938 | 4008186 | + | NC_014541.1 | Ferrimonas balearica DSM 9799 |
| 21 | 104086 | 104337 | + | NZ_AP018689.1 | Vibrio aphrogenes |
| 22 | 527903 | 528142 | - | NC_007954.1 | Shewanella denitrificans OS217 |
| 23 | 4164495 | 4164749 | + | NZ_CP016176.1 | Xenorhabdus hominickii |
| 24 | 3861437 | 3861703 | + | NC_010554.1 | Proteus mirabilis HI4320 |
| 25 | 2496429 | 2496668 | - | NZ_CP034759.1 | Litorilituus sediminis |
| 26 | 93813 | 94067 | + | NC_011753.2 | Vibrio atlanticus |
| 27 | 3027400 | 3027648 | - | NZ_CP032093.1 | Vibrio alfacsensis |
| 28 | 1974666 | 1974938 | + | NZ_CP026364.1 | Proteus hauseri |
| 29 | 4704191 | 4704439 | - | NZ_AP022188.1 | Aeromonas media |
| 30 | 3685332 | 3685589 | - | NZ_CP072455.1 | Xenorhabdus budapestensis |
| 31 | 85010 | 85258 | + | NZ_CP030788.1 | Vibrio campbellii |
| 32 | 3012159 | 3012407 | - | NZ_CP018312.1 | Vibrio rotiferianus |
| 33 | 1719203 | 1719451 | - | NZ_CP019959.1 | Vibrio owensii |
| 34 | 309169 | 309417 | + | NZ_CP009467.1 | Vibrio harveyi |
| 35 | 3090199 | 3090441 | - | NZ_CP047475.1 | Vibrio astriarenae |
| 36 | 1373845 | 1374099 | - | NZ_CP065150.1 | Vibrio kanaloae |
| 37 | 3234941 | 3235195 | - | NZ_CP039700.1 | Vibrio cyclitrophicus |
| 38 | 3226482 | 3226724 | - | NZ_CP009354.1 | Vibrio tubiashii ATCC 19109 |
| 39 | 378974 | 379243 | + | NZ_CP047349.1 | Proteus terrae subsp. cibarius |
| 40 | 3405041 | 3405301 | - | NZ_CP034035.1 | Brenneria rubrifaciens |
| 41 | 3442729 | 3443010 | - | NZ_CP029185.2 | Limnobaculum parvum |
| 42 | 4389082 | 4389348 | - | NZ_CP011118.1 | Yersinia enterocolitica |
| 43 | 2859333 | 2859581 | - | NZ_AP014524.1 | Vibrio cholerae MS6 |
| 44 | 4263052 | 4263333 | - | NZ_CP034752.1 | Jinshanibacter zhutongyuii |
| 45 | 249513 | 249749 | + | NZ_CP044069.1 | Vibrio vulnificus |
| 46 | 2517301 | 2517549 | - | NZ_CP035688.1 | Vibrio metoecus |
| 47 | 3903640 | 3903894 | - | NZ_CP038853.1 | Pantoea vagans |
| 48 | 325860 | 326123 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 49 | 3923575 | 3923820 | + | NZ_CP040449.1 | Aeromonas simiae |
| 50 | 3063334 | 3063576 | + | NZ_CP016414.1 | Vibrio scophthalmi |
| 51 | 5158550 | 5158810 | - | NC_005126.1 | Photorhabdus laumondii subsp. laumondii TTO1 |
| 52 | 1476493 | 1476756 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 53 | 2388505 | 2388777 | - | NZ_CP009781.1 | Yersinia aldovae 670-83 |
| 54 | 3159996 | 3160241 | - | NZ_CP031781.1 | Vibrio parahaemolyticus |
| 55 | 165202 | 165477 | + | NZ_LR134531.1 | Pragia fontium |
| 56 | 1790939 | 1791202 | + | NZ_CP065640.1 | Serratia rubidaea |
| 57 | 419759 | 420025 | - | NC_008709.1 | Psychromonas ingrahamii 37 |
| 58 | 3390693 | 3390959 | - | NZ_FO704550.1 | Xenorhabdus doucetiae |
| 59 | 3874501 | 3874755 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 60 | 3243310 | 3243570 | + | NZ_CP011041.1 | Pseudoalteromonas tetraodonis |
| 61 | 3278599 | 3278859 | + | NZ_CP011030.1 | Pseudoalteromonas issachenkonii |
| 62 | 2988320 | 2988562 | - | NZ_FO704551.1 | Xenorhabdus poinarii G6 |
| 63 | 204787 | 205050 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 64 | 3358146 | 3358409 | + | NZ_CP016337.1 | Kosakonia sacchari |
| 65 | 1357086 | 1357328 | + | NZ_CP031560.1 | Dickeya dianthicola |
| 66 | 4535488 | 4535745 | + | NZ_CP014137.1 | Brenneria goodwinii |
| 67 | 3574551 | 3574805 | + | NZ_CP011028.1 | Pseudoalteromonas espejiana DSM 9414 |
| 68 | 217605 | 217874 | + | NZ_LS483470.1 | Leminorella richardii |
| 69 | 4294185 | 4294445 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 70 | 3491054 | 3491308 | + | NZ_CP033065.1 | Pseudoalteromonas agarivorans |
| 71 | 3550525 | 3550779 | + | NZ_CP023464.1 | Pseudoalteromonas atlantica |
| 72 | 142364 | 142633 | + | NC_012779.2 | Edwardsiella ictaluri 93-146 |
| 73 | 4120078 | 4120347 | + | NZ_CP060401.1 | Xenorhabdus nematophila |
| 74 | 1299653 | 1299916 | + | NZ_CP023009.1 | Lonsdalea britannica |
| 75 | 660676 | 660948 | - | NC_007963.1 | Chromohalobacter salexigens DSM 3043 |
| 76 | 511157 | 511405 | + | NC_013892.1 | Xenorhabdus bovienii SS-2004 |
| 77 | 2195343 | 2195609 | + | NZ_CP011254.1 | Serratia fonticola |
| 78 | 3249570 | 3249818 | + | NC_011312.1 | Aliivibrio salmonicida LFI1238 |
| 79 | 240966 | 241229 | + | NZ_CP034036.1 | Brenneria nigrifluens DSM 30175 = ATCC 13028 |
| 80 | 101180 | 101434 | - | NZ_CP027523.1 | Pseudoalteromonas carrageenovora |
| 81 | 2262394 | 2262654 | - | NZ_CP014136.1 | Gibbsiella quercinecans |
| 82 | 253900 | 254169 | + | NZ_CP050150.1 | Hafnia alvei |
| 83 | 4489239 | 4489490 | - | NZ_LR134376.1 | Aeromonas encheleia |
| 84 | 1909639 | 1909908 | + | NZ_CP006664.1 | Edwardsiella anguillarum ET080813 |
| 85 | 5172715 | 5172978 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 86 | 286741 | 287007 | + | NZ_CP006569.1 | Sodalis praecaptivus |
| 87 | 591139 | 591408 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 88 | 157352 | 157612 | + | NZ_CP065534.1 | Lonsdalea populi |
| 89 | 2296222 | 2296476 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 90 | 2794158 | 2794412 | + | NZ_CP033744.1 | Citrobacter freundii |
| 91 | 1532227 | 1532496 | - | NZ_CP023706.1 | Edwardsiella tarda |
| 92 | 3602380 | 3602649 | - | NZ_CP016043.1 | Edwardsiella hoshinae |
| 93 | 3307963 | 3308217 | - | NZ_CP038469.1 | Citrobacter tructae |
| 94 | 4525433 | 4525693 | - | NC_012962.1 | Photorhabdus asymbiotica |
| 95 | 248592 | 248855 | + | NZ_LT906479.1 | Serratia ficaria |
| 96 | 253306 | 253569 | + | NZ_LR134494.1 | Serratia quinivorans |
| 97 | 235764 | 236027 | + | NC_015567.1 | Serratia plymuthica AS9 |
| 98 | 3179711 | 3179977 | + | NZ_CP009787.1 | Yersinia rohdei |
| 99 | 624036 | 624299 | - | NZ_CP007044.2 | Chania multitudinisentens RB-25 |
| 100 | 238450 | 238713 | + | NZ_CP048784.1 | Serratia liquefaciens |
| 101 | 4707248 | 4707511 | + | NZ_CP016948.1 | Serratia surfactantfaciens |
| 102 | 4123247 | 4123504 | - | NZ_CP042220.2 | Dickeya poaceiphila |
| 103 | 4814905 | 4815168 | - | NZ_CP071320.1 | Serratia ureilytica |
| 104 | 217921 | 218184 | + | NZ_CP038662.1 | Serratia nematodiphila |
| 105 | 2533426 | 2533686 | + | NZ_CP011104.1 | Photorhabdus thracensis |
| 106 | 3993296 | 3993535 | + | NZ_CP043042.1 | Marinobacter fonticola |
| 107 | 174742 | 174999 | + | NC_003910.7 | Colwellia psychrerythraea 34H |
| 108 | 649449 | 649679 | + | NZ_CP028926.1 | Pasteurella multocida |
| 109 | 5142621 | 5142863 | - | NZ_CP011253.3 | Pandoraea oxalativorans |
| 110 | 5297781 | 5298023 | - | NZ_LT906435.1 | Pandoraea sputorum |
| 111 | 4941666 | 4941911 | - | NC_023018.2 | Pandoraea pnomenusa |
| 112 | 5061057 | 5061308 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 113 | 199166 | 199417 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 114 | 5012869 | 5013120 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 115 | 5302397 | 5302648 | - | NZ_CP054254.1 | Klebsiella variicola |
| 116 | 1516992 | 1517231 | - | NZ_CP052766.1 | Alteromonas pelagimontana |
| 117 | 3386114 | 3386368 | + | NZ_CP021435.1 | Halomonas beimenensis |
| 118 | 3886260 | 3886517 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 119 | 320328 | 320585 | - | NZ_LR134510.1 | Actinobacillus delphinicola |
| 120 | 403227 | 403487 | + | NZ_CP070624.1 | Photobacterium damselae subsp. damselae |
| 121 | 3144159 | 3144425 | + | NZ_CP014226.1 | Halomonas chromatireducens |
| 122 | 3088168 | 3088413 | + | NZ_LS483250.1 | Moritella yayanosii |
| 123 | 3900187 | 3900432 | - | NZ_CP044399.1 | Moritella marina ATCC 15381 |
| 124 | 3726465 | 3726707 | - | NZ_CP036536.1 | Salinimonas lutimaris |
| 125 | 4484467 | 4484730 | + | NZ_CP031123.2 | Providencia huaxiensis |
| 126 | 219071 | 219334 | - | NZ_CP029736.1 | Providencia rettgeri |
| 127 | 661928 | 662191 | + | NZ_LS483422.1 | Providencia heimbachae |
| 128 | 426326 | 426595 | - | NZ_CP023536.1 | Providencia alcalifaciens |
| 129 | 134188 | 134424 | - | NZ_CP017689.1 | Thalassotalea crassostreae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_AP018689.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01209.20 | 0.92 | 119 | 2363 | same-strand | ubiE/COQ5 methyltransferase family |
| 2 | PF13649.8 | 0.92 | 119 | 2363 | same-strand | Methyltransferase domain |
| 3 | PF08241.14 | 0.92 | 119 | 2363 | same-strand | Methyltransferase domain |
| 4 | PF13489.8 | 0.91 | 118 | 2362.5 | same-strand | Methyltransferase domain |
| 5 | PF08242.14 | 0.92 | 119 | 2363 | same-strand | Methyltransferase domain |
| 6 | PF02036.19 | 0.93 | 120 | 1716.0 | same-strand | SCP-2 sterol transfer family |
| 7 | PF03109.18 | 0.94 | 121 | 82 | same-strand | ABC1 atypical kinase-like domain |
| 8 | PF00902.20 | 0.99 | 128 | 513.0 | same-strand | Sec-independent protein translocase protein (TatC) |
| 9 | PF01026.23 | 0.78 | 100 | 1489.0 | same-strand | TatD related DNase |
| 10 | PF02646.18 | 0.6 | 78 | 3195.0 | same-strand | RmuC family |
++ More..