* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00551.21
|
1.0
|
6
|
2793
|
opposite-strand
|
Formyl transferase
|
2
|
PF01842.27
|
1.0
|
6
|
2793
|
opposite-strand
|
ACT domain
|
3
|
PF17775.3
|
1.0
|
6
|
2285
|
opposite-strand
|
UPF0225 domain
|
4
|
PF02810.17
|
1.0
|
6
|
2285
|
opposite-strand
|
SEC-C motif
|
5
|
PF01734.24
|
1.0
|
6
|
1267
|
same-strand
|
Patatin-like phospholipase
|
6
|
PF00072.26
|
1.0
|
6
|
162
|
same-strand
|
Response regulator receiver domain
|
7
|
PF00483.25
|
1.0
|
6
|
-13
|
same-strand
|
Nucleotidyl transferase
|
8
|
PF00816.23
|
1.0
|
6
|
1039
|
opposite-strand
|
H-NS histone family
|
9
|
PF00265.20
|
1.0
|
6
|
2056
|
same-strand
|
Thymidine kinase
|
10
|
PF00465.21
|
0.67
|
4
|
2992.0
|
opposite-strand
|
Iron-containing alcohol dehydrogenase
|
11
|
PF00171.24
|
0.67
|
4
|
2992.0
|
opposite-strand
|
Aldehyde dehydrogenase family
|
++ More..