* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00462.26
|
1.0
|
8
|
3718
|
opposite-strand
|
Glutaredoxin
|
2
|
PF00877.21
|
1.0
|
8
|
2568
|
same-strand
|
NlpC/P60 family
|
3
|
PF13377.8
|
0.88
|
7
|
-79.0
|
same-strand
|
Periplasmic binding protein-like domain
|
4
|
PF00532.23
|
1.0
|
8
|
-88
|
same-strand
|
Periplasmic binding proteins and sugar binding domain of LacI family
|
5
|
PF13407.8
|
1.0
|
8
|
-88
|
same-strand
|
Periplasmic binding protein domain
|
6
|
PF00356.23
|
1.0
|
8
|
-88
|
same-strand
|
Bacterial regulatory proteins, lacI family
|
7
|
PF02353.22
|
1.0
|
8
|
3469
|
same-strand
|
Mycolic acid cyclopropane synthetase
|
8
|
PF13649.8
|
1.0
|
8
|
3469
|
same-strand
|
Methyltransferase domain
|
9
|
PF08241.14
|
1.0
|
8
|
3469
|
same-strand
|
Methyltransferase domain
|
10
|
PF08242.14
|
1.0
|
8
|
3469
|
same-strand
|
Methyltransferase domain
|
11
|
PF00677.19
|
1.0
|
8
|
4669
|
opposite-strand
|
Lumazine binding domain
|
++ More..