Protein Information |
Information Type | Description |
---|---|
Protein name | EXP00140 |
NCBI Accession ID | NC_000913.3 |
Organism | Escherichia coli str. K-12 substr. MG1655 |
Left | 3931193 |
Right | 3931312 |
Strand | + |
Nucleotide Sequence | TTGAGCCAGGTTAATGTGGCCGCATTTAGGAGTACGATTTTGCCGTTAATCGTGCATACTGTGCGCTTTTTTGTGGGCCAAGGGACTAAGCACACATTTCATATTTCAACGAAAGACTAG |
Sequence | LSQVNVAAFRSTILPLIVHTVRFFVGQGTKHTFHISTKD |
Source of smORF | Ribo-seq |
Function | |
Pubmed ID | 30904393 27013550 |
Domain | |
Functional Category | Function not yet assigned |
Uniprot ID | |
ORF Length (Amino Acid) | 39 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 4724762 | 4724881 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
2 | 3931193 | 3931312 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
3 | 3939897 | 3940016 | + | NC_004337.2 | Shigella flexneri 2a str. 301 |
4 | 4257972 | 4258091 | + | NZ_CP061527.1 | Shigella dysenteriae |
5 | 4411798 | 4411917 | - | NZ_LR134340.1 | Escherichia marmotae |
6 | 3898080 | 3898199 | + | NZ_AP014857.1 | Escherichia albertii |
7 | 4227621 | 4227731 | - | NC_013716.1 | Citrobacter rodentium ICC168 |
8 | 5223 | 5342 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
9 | 4646103 | 4646222 | - | NZ_CP035129.1 | Kosakonia cowanii |
10 | 2841560 | 2841685 | - | NZ_CP057657.1 | Escherichia fergusonii |
11 | 1179651 | 1179782 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
12 | 4569841 | 4569960 | - | NZ_CP011602.1 | Phytobacter ursingii |
13 | 440431 | 440550 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
14 | 4102376 | 4102477 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF00258.27 | 0.77 | 10 | 4739 | opposite-strand | Flavodoxin |
2 | PF01037.23 | 0.92 | 12 | 4190 | opposite-strand | Lrp/AsnC ligand binding domain |
3 | PF13412.8 | 0.92 | 12 | 4190 | opposite-strand | Winged helix-turn-helix DNA-binding |
4 | PF13404.8 | 0.92 | 12 | 4190 | opposite-strand | AsnC-type helix-turn-helix domain |
5 | PF03590.17 | 0.92 | 12 | 3046 | same-strand | Aspartate-ammonia ligase |
6 | PF13519.8 | 1.0 | 13 | 1590.0 | opposite-strand | von Willebrand factor type A domain |
7 | PF20030.1 | 1.0 | 13 | 100.0 | opposite-strand | MoxR domain in the MoxR-vWA-beta-propeller ternary systems |
8 | PF07728.16 | 1.0 | 13 | 100.0 | opposite-strand | AAA domain (dynein-related subfamily) |
9 | PF12592.10 | 1.0 | 13 | 100.0 | opposite-strand | Protein of unknown function (DUF3763) |
10 | PF17868.3 | 1.0 | 13 | 100.0 | opposite-strand | AAA lid domain |
11 | PF07726.13 | 0.69 | 9 | 100.0 | opposite-strand | ATPase family associated with various cellular activities (AAA) |
12 | PF02705.18 | 1.0 | 13 | 4.0 | same-strand | K+ potassium transporter |
13 | PF05025.15 | 0.92 | 12 | 2055 | same-strand | RbsD / FucU transport protein family |
14 | PF00005.29 | 1.0 | 13 | 2485.5 | same-strand | ABC transporter |
15 | PF02653.18 | 0.85 | 11 | 3995.5 | same-strand | Branched-chain amino acid transport system / permease component |
16 | PF13407.8 | 0.85 | 11 | 4987.5 | same-strand | Periplasmic binding protein domain |
17 | PF00532.23 | 0.85 | 11 | 4987.5 | same-strand | Periplasmic binding proteins and sugar binding domain of LacI family |
18 | PF13377.8 | 0.85 | 11 | 4987.5 | same-strand | Periplasmic binding protein-like domain |