Result : B0TGP1
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0235 protein Helmi_20270 |
| NCBI Accession ID | CP000930.2 |
| Organism | Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) |
| Left | 2096323 |
| Right | 2096613 |
| Strand | + |
| Nucleotide Sequence | ATGGGTTGGATTCAGGAACAGCCCGGCGGCTCGATTCGTTTCAGGATCCGGGTGCAGCCGCGGGCATCGAAAAACGAGGTCTGCGGTCTTTTAGACGATGCCTTGAAGGTCCGCCTGACGGCGCCGCCTGTCGACGGTGAGGCGAACGCCGCTTGCCTGCAGTTTATTGCCAAGACCCTCGGCCTCTCCCGCAGCCAGGTGCGTCTGGTGGCGGGGGAGACGTCGCGCTTGAAGACACTTGAGGTGGAGGGAGTCAGTGCAGAGGATTTGCGCAAGAGGTTTGACATCTGA |
| Sequence | MGWIQEQPGGSIRFRIRVQPRASKNEVCGLLDDALKVRLTAPPVDGEANAACLQFIAKTLGLSRSQVRLVAGETSRLKTLEVEGVSAEDLRKRFDI |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00811. Profile Description: Uncharacterized ACR, YggU family COG1872. hypothetical protein; Validated |
| Pubmed ID | 18441057 |
| Domain | CDD:412584 |
| Functional Category | Others |
| Uniprot ID | B0TGP1 |
| ORF Length (Amino Acid) | 96 |
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| Conservation Analysis |
No. of Species: 17
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2096323 | 2096613 | + | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 2 | 330070 | 330348 | + | NZ_CP045798.1 | Thermoanaerosceptrum fracticalcis |
| 3 | 1112342 | 1112590 | + | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 4 | 3624718 | 3624957 | - | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 5 | 2646716 | 2647024 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 6 | 2168951 | 2169253 | - | NZ_CP036259.1 | Sporomusa termitida |
| 7 | 6222483 | 6222734 | + | NC_017030.1 | Corallococcus coralloides DSM 2259 |
| 8 | 856284 | 856526 | + | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 9 | 1378761 | 1379069 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 10 | 1988639 | 1988893 | + | NC_011979.1 | Geobacter daltonii FRC-32 |
| 11 | 4511677 | 4511937 | - | NC_020126.1 | Myxococcus stipitatus DSM 14675 |
| 12 | 1289079 | 1289321 | - | NC_007517.1 | Geobacter metallireducens GS-15 |
| 13 | 246310 | 246645 | - | NZ_AP018786.1 | Sutterella megalosphaeroides |
| 14 | 4591624 | 4591872 | - | NC_008576.1 | Magnetococcus marinus MC-1 |
| 15 | 8502802 | 8503038 | - | NZ_CP011125.1 | Sandaracinus amylolyticus |
| 16 | 4415068 | 4415331 | - | NC_005027.1 | Rhodopirellula baltica SH 1 |
| 17 | 951845 | 952096 | - | NZ_CP012332.1 | Vulgatibacter incomptus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_010337.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF05103.15 | 0.65 | 11 | 40 | same-strand | DivIVA protein |
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