* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF05708.14
|
1.0
|
2
|
4503
|
opposite-strand
|
Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
|
2
|
PF01340.22
|
1.0
|
2
|
4002
|
opposite-strand
|
Met Apo-repressor, MetJ
|
3
|
PF01053.22
|
1.0
|
2
|
2565
|
same-strand
|
Cys/Met metabolism PLP-dependent enzyme
|
4
|
PF00742.21
|
1.0
|
2
|
130
|
same-strand
|
Homoserine dehydrogenase
|
5
|
PF00696.30
|
1.0
|
2
|
130
|
same-strand
|
Amino acid kinase family
|
6
|
PF03447.18
|
1.0
|
2
|
130
|
same-strand
|
Homoserine dehydrogenase, NAD binding domain
|
7
|
PF02219.19
|
1.0
|
2
|
133
|
same-strand
|
Methylenetetrahydrofolate reductase
|
8
|
PF00141.25
|
1.0
|
2
|
1352
|
same-strand
|
Peroxidase
|
9
|
PF00892.22
|
1.0
|
2
|
3626
|
same-strand
|
EamA-like transporter family
|
10
|
PF01197.20
|
1.0
|
2
|
5172.0
|
same-strand
|
Ribosomal protein L31
|
++ More..