* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_004337.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13495.8
|
0.67
|
2
|
1074.0
|
same-strand
|
Phage integrase, N-terminal SAM-like domain
|
2
|
PF06167.14
|
1.0
|
3
|
41.0
|
same-strand
|
Glucose-regulated metallo-peptidase M90
|
3
|
PF11924.10
|
0.67
|
2
|
384
|
same-strand
|
Inverse autotransporter, beta-domain
|
4
|
PF00665.28
|
0.67
|
2
|
1885
|
same-strand
|
Integrase core domain
|
5
|
PF13683.8
|
0.67
|
2
|
1885
|
same-strand
|
Integrase core domain
|
6
|
PF01527.22
|
0.67
|
2
|
2494
|
same-strand
|
Transposase
|
++ More..