* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP045203.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01527.22
|
0.8
|
4
|
648.0
|
same-strand
|
Transposase
|
2
|
PF00078.29
|
1.0
|
5
|
362
|
same-strand
|
Reverse transcriptase (RNA-dependent DNA polymerase)
|
3
|
PF13683.8
|
0.8
|
4
|
2062.0
|
same-strand
|
Integrase core domain
|
4
|
PF08388.13
|
0.6
|
3
|
377
|
same-strand
|
Group II intron, maturase-specific domain
|
5
|
PF13333.8
|
0.6
|
3
|
2062
|
same-strand
|
Integrase core domain
|
++ More..