* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_002695.2
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00579.27
|
0.67
|
2
|
3128
|
opposite-strand
|
tRNA synthetases class I (W and Y)
|
2
|
PF01479.27
|
0.67
|
2
|
3128
|
opposite-strand
|
S4 domain
|
3
|
PF01243.22
|
0.67
|
2
|
2343
|
opposite-strand
|
Pyridoxamine 5'-phosphate oxidase
|
4
|
PF10590.11
|
0.67
|
2
|
2343
|
opposite-strand
|
Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region
|
5
|
PF09864.11
|
0.67
|
2
|
1961
|
opposite-strand
|
Membrane-bound lysozyme-inhibitor of c-type lysozyme
|
6
|
PF03702.16
|
1.0
|
3
|
748.0
|
opposite-strand
|
Anhydro-N-acetylmuramic acid kinase
|
7
|
PF05433.17
|
1.0
|
3
|
7.0
|
same-strand
|
Glycine zipper 2TM domain
|
8
|
PF01047.24
|
1.0
|
3
|
-25.0
|
opposite-strand
|
MarR family
|
9
|
PF12802.9
|
1.0
|
3
|
-25.0
|
opposite-strand
|
MarR family
|
10
|
PF13463.8
|
1.0
|
3
|
-25.0
|
opposite-strand
|
Winged helix DNA-binding domain
|
11
|
PF07869.14
|
1.0
|
3
|
610.0
|
same-strand
|
Protein of unknown function (DUF1656)
|
12
|
PF13533.8
|
1.0
|
3
|
849.0
|
same-strand
|
Biotin-lipoyl like
|
13
|
PF00529.22
|
1.0
|
3
|
849.0
|
same-strand
|
Cation efflux system protein CusB domain 1
|
14
|
PF04632.14
|
1.0
|
3
|
1908.5
|
same-strand
|
Fusaric acid resistance protein family
|
++ More..