* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00196.21
|
1.0
|
5
|
91
|
same-strand
|
Bacterial regulatory proteins, luxR family
|
2
|
PF06411.13
|
1.0
|
5
|
1835.5
|
opposite-strand
|
HdeA/HdeB family
|
3
|
PF03729.15
|
1.0
|
5
|
628.0
|
same-strand
|
Short repeat of unknown function (DUF308)
|
4
|
PF16576.7
|
1.0
|
5
|
957.0
|
same-strand
|
Barrel-sandwich domain of CusB or HlyD membrane-fusion
|
5
|
PF00529.22
|
0.8
|
4
|
957
|
same-strand
|
Cation efflux system protein CusB domain 1
|
6
|
PF13437.8
|
1.0
|
5
|
957.0
|
same-strand
|
HlyD family secretion protein
|
7
|
PF13533.8
|
1.0
|
5
|
957.0
|
same-strand
|
Biotin-lipoyl like
|
8
|
PF00873.21
|
0.8
|
4
|
2139
|
same-strand
|
AcrB/AcrD/AcrF family
|
9
|
PF12833.9
|
0.6
|
3
|
5638.0
|
opposite-strand
|
Helix-turn-helix domain
|
10
|
PF00005.29
|
0.6
|
3
|
2912
|
same-strand
|
ABC transporter
|
11
|
PF13521.8
|
0.6
|
3
|
2912
|
same-strand
|
AAA domain
|
++ More..