* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134340.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF04977.17
|
1.0
|
5
|
3581.0
|
opposite-strand
|
Septum formation initiator
|
2
|
PF12084.10
|
1.0
|
5
|
3064.0
|
opposite-strand
|
Protein of unknown function (DUF3561)
|
3
|
PF01583.22
|
1.0
|
5
|
2409.0
|
opposite-strand
|
Adenylylsulphate kinase
|
4
|
PF00009.29
|
1.0
|
5
|
982.0
|
opposite-strand
|
Elongation factor Tu GTP binding domain
|
5
|
PF01507.21
|
1.0
|
5
|
73
|
opposite-strand
|
Phosphoadenosine phosphosulfate reductase family
|
6
|
PF04389.19
|
1.0
|
5
|
139.0
|
same-strand
|
Peptidase family M28
|
7
|
PF01848.18
|
0.6
|
3
|
1302
|
opposite-strand
|
Hok/gef family
|
8
|
PF01077.24
|
0.6
|
3
|
2632
|
opposite-strand
|
Nitrite and sulphite reductase 4Fe-4S domain
|
9
|
PF03460.19
|
0.6
|
3
|
2632
|
opposite-strand
|
Nitrite/Sulfite reductase ferredoxin-like half domain
|
10
|
PF13671.8
|
0.8
|
4
|
2409
|
opposite-strand
|
AAA domain
|
++ More..