Result : B0T3Y0
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Exodeoxyribonuclease 7 small subunit (EC 3.1.11.6) (Exodeoxyribonuclease VII small subunit) (Exonuclease VII small subunit) |
| NCBI Accession ID | CP000927.1 |
| Organism | Caulobacter sp. (strain K31) |
| Left | 3598822 |
| Right | 3599064 |
| Strand | - |
| Nucleotide Sequence | ATGATCAGTCCGCAAGATCTTGAAGGCATGAGCTTTGAGCAGGCGCTAGCGCGTCTGGAGCAGATTGTCGGCGAACTGGAGTCTGGCAAGGCCGAGCTTGAACGCTCGATCGAGATCTACGAGGACGGCGCGGCCCTGAAGGCCCACTGCGAGAAGAAGCTCGAAGCCGCCCGCCTGAAGGTCGAGAAGATCGTGCTGGGCCAAGGCGGCGCGGTCAGCGCCGAAGCGGCCGAGTTCAACTGA |
| Sequence | MISPQDLEGMSFEQALARLEQIVGELESGKAELERSIEIYEDGAALKAHCEKKLEAARLKVEKIVLGQGGAVSAEAAEFN |
| Source of smORF | Swiss-Prot |
| Function | Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides. {ECO:0000255|HAMAP-Rule:MF_00337}. |
| Pubmed ID | |
| Domain | CDD:412547 |
| Functional Category | Others |
| Uniprot ID | B0T3Y0 |
| ORF Length (Amino Acid) | 80 |
++ More..
| Conservation Analysis |
No. of Species: 145
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1559593 | 1559835 | + | NZ_CP048815.1 | Caulobacter rhizosphaerae |
| 2 | 1459498 | 1459713 | + | NZ_CP027850.1 | Caulobacter segnis |
| 3 | 2308196 | 2308450 | - | NC_011916.1 | Caulobacter vibrioides NA1000 |
| 4 | 5083876 | 5084109 | - | NZ_CP026100.1 | Caulobacter flavus |
| 5 | 2489184 | 2489441 | - | NZ_CP013002.1 | Caulobacter henricii |
| 6 | 1003390 | 1003632 | + | NC_011144.1 | Phenylobacterium zucineum HLK1 |
| 7 | 1791940 | 1792182 | - | NZ_CP029479.1 | Phenylobacterium parvum |
| 8 | 3257995 | 3258210 | - | NZ_CP024201.1 | Caulobacter mirabilis |
| 9 | 1743154 | 1743369 | + | NC_014414.1 | Parvularcula bermudensis HTCC2503 |
| 10 | 1518587 | 1518805 | - | NC_014816.1 | Asticcacaulis excentricus CB 48 |
| 11 | 2815881 | 2816132 | - | NC_014375.1 | Brevundimonas subvibrioides ATCC 15264 |
| 12 | 845256 | 845456 | + | NC_009719.1 | Parvibaculum lavamentivorans DS-1 |
| 13 | 1475478 | 1475702 | - | NZ_CP071057.1 | Marinicauda algicola |
| 14 | 2306446 | 2306676 | - | NZ_LR588407.1 | Brevundimonas vancanneytii |
| 15 | 1255727 | 1255948 | + | NC_012982.1 | Hirschia baltica ATCC 49814 |
| 16 | 613891 | 614142 | - | NZ_CP022048.2 | Brevundimonas vesicularis |
| 17 | 1458446 | 1458697 | + | NZ_CP018911.1 | Glycocaulis alkaliphilus |
| 18 | 796177 | 796371 | - | NC_016026.1 | Micavibrio aeruginosavorus ARL-13 |
| 19 | 768711 | 768908 | + | NZ_CP022110.1 | Nitrospirillum amazonense CBAmc |
| 20 | 573000 | 573242 | + | NZ_CP060717.1 | Sphingomonas rhizophila |
| 21 | 411029 | 411247 | - | NZ_CP041659.1 | Sphingomonas xanthus |
| 22 | 3099363 | 3099578 | + | NC_007626.1 | Magnetospirillum magneticum AMB-1 |
| 23 | 2689554 | 2689754 | - | NZ_CP061205.1 | Kordiimonas pumila |
| 24 | 2154934 | 2155137 | - | NC_014664.1 | Rhodomicrobium vannielii ATCC 17100 |
| 25 | 2124273 | 2124515 | + | NZ_CP042261.1 | Qingshengfaniella alkalisoli |
| 26 | 222285 | 222527 | - | NZ_CP042304.1 | Devosia ginsengisoli |
| 27 | 1111858 | 1112079 | + | NZ_AP014648.1 | Methyloceanibacter caenitepidi |
| 28 | 561328 | 561543 | + | NZ_CP040517.1 | Luteithermobacter gelatinilyticus |
| 29 | 5781905 | 5782123 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 30 | 4916431 | 4916649 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 31 | 2674826 | 2675044 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 32 | 1325498 | 1325743 | - | NC_023065.1 | Magnetospirillum gryphiswaldense MSR-1 v2 |
| 33 | 1811047 | 1811265 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 34 | 5087948 | 5088166 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 35 | 6171959 | 6172177 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 36 | 1063936 | 1064193 | + | NC_017956.1 | Tistrella mobilis KA081020-065 |
| 37 | 1821831 | 1822031 | + | NZ_CP012023.1 | Celeribacter marinus |
| 38 | 498359 | 498613 | + | NZ_HG965802.1 | Bartonella henselae |
| 39 | 1743261 | 1743536 | + | NC_017059.1 | Pararhodospirillum photometricum DSM 122 |
| 40 | 3045807 | 3046004 | + | NC_017584.1 | Rhodospirillum rubrum F11 |
| 41 | 5758794 | 5759012 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 42 | 4082736 | 4082963 | + | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 43 | 3559906 | 3560100 | + | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 44 | 2182906 | 2183124 | + | NZ_CP041636.1 | Ferrovibrio terrae |
| 45 | 5185064 | 5185282 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 46 | 2827131 | 2827331 | - | NZ_LN832559.1 | Paracoccus aminovorans |
| 47 | 2019667 | 2019900 | - | NC_014313.1 | Hyphomicrobium denitrificans ATCC 51888 |
| 48 | 1755739 | 1755960 | - | NZ_CP017057.1 | Erythrobacter litoralis |
| 49 | 1452690 | 1452908 | + | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 50 | 2554338 | 2554556 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 51 | 2100130 | 2100327 | - | NZ_CP034328.1 | Tabrizicola piscis |
| 52 | 339317 | 339571 | + | NZ_CP031844.2 | Bartonella krasnovii |
| 53 | 2521082 | 2521324 | - | NZ_CP015093.1 | Salipiger abyssi |
| 54 | 370504 | 370758 | + | NZ_LR134527.1 | Bartonella elizabethae |
| 55 | 681898 | 682152 | + | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 56 | 398501 | 398719 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 57 | 2633220 | 2633435 | + | NZ_CP021330.1 | Maritalea myrionectae |
| 58 | 1131059 | 1131277 | - | NZ_CP041690.1 | Youhaiella tibetensis |
| 59 | 2531867 | 2532088 | + | NZ_CP016033.1 | Erythrobacter neustonensis |
| 60 | 1363722 | 1363976 | - | NZ_CP010401.1 | Bartonella ancashensis |
| 61 | 702790 | 703044 | + | NZ_LR134529.1 | Bartonella vinsonii |
| 62 | 3789874 | 3790071 | + | NZ_CP034179.1 | Caenibius tardaugens NBRC 16725 |
| 63 | 4235898 | 4236098 | - | NZ_CP012661.1 | Defluviimonas alba |
| 64 | 177857 | 178057 | + | NC_022041.1 | Paracoccus aminophilus JCM 7686 |
| 65 | 1112954 | 1113208 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 66 | 565492 | 565746 | + | NC_012846.1 | Bartonella grahamii as4aup |
| 67 | 2531872 | 2532114 | - | NZ_CP022196.1 | Celeribacter ethanolicus |
| 68 | 241363 | 241563 | + | NZ_CP038439.1 | Paracoccus liaowanqingii |
| 69 | 850121 | 850339 | + | NZ_CP068983.1 | Paradevosia shaoguanensis |
| 70 | 1100836 | 1101090 | - | NZ_AP019773.1 | Bartonella quintana |
| 71 | 472194 | 472394 | + | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 72 | 1191806 | 1192063 | + | NC_011666.1 | Methylocella silvestris BL2 |
| 73 | 1021874 | 1022068 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 74 | 1372821 | 1373075 | + | NZ_CP058235.1 | Bartonella alsatica |
| 75 | 1040931 | 1041131 | + | NZ_CP045073.1 | Paracoccus kondratievae |
| 76 | 709142 | 709342 | - | NZ_CP024422.1 | Paracoccus yeei |
| 77 | 1187053 | 1187253 | - | NZ_CP030239.1 | Paracoccus mutanolyticus |
| 78 | 3462803 | 3463045 | - | NC_009952.1 | Dinoroseobacter shibae DFL 12 = DSM 16493 |
| 79 | 431675 | 431893 | + | NC_010103.1 | Brucella canis ATCC 23365 |
| 80 | 431674 | 431892 | + | NC_004310.3 | Brucella suis 1330 |
| 81 | 453673 | 453891 | + | NC_009505.1 | Brucella ovis ATCC 25840 |
| 82 | 433705 | 433923 | + | NC_013119.1 | Brucella microti CCM 4915 |
| 83 | 1551000 | 1551218 | - | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 84 | 1554103 | 1554321 | - | NC_022905.1 | Brucella ceti TE10759-12 |
| 85 | 449843 | 450061 | + | NC_007618.1 | Brucella abortus 2308 |
| 86 | 131678 | 131896 | - | NZ_LT605585.1 | Brucella inopinata |
| 87 | 533857 | 534057 | + | NZ_CP064063.1 | Brucella anthropi |
| 88 | 959063 | 959317 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 89 | 621985 | 622242 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 90 | 1303749 | 1303994 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 91 | 2607955 | 2608200 | + | NZ_CP048630.1 | Ancylobacter pratisalsi |
| 92 | 174335 | 174574 | - | NZ_CP019937.1 | Ketogulonicigenium robustum |
| 93 | 560562 | 560813 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 94 | 1357110 | 1357310 | - | NC_010581.1 | Beijerinckia indica subsp. indica ATCC 9039 |
| 95 | 542815 | 543042 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 96 | 504333 | 504587 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 97 | 684639 | 684860 | + | NZ_CP037948.1 | Qipengyuania sediminis |
| 98 | 438310 | 438564 | + | NC_020300.1 | Bartonella australis Aust/NH1 |
| 99 | 495723 | 495977 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 100 | 3470136 | 3470393 | - | NC_022997.1 | Hyphomicrobium nitrativorans NL23 |
| 101 | 1200828 | 1201073 | - | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 102 | 244399 | 244653 | + | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 103 | 990490 | 990741 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 104 | 940729 | 940980 | - | NZ_CP020906.1 | Rhizobium etli |
| 105 | 3372791 | 3373042 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 106 | 1020702 | 1020929 | - | NZ_CP071604.1 | Rhizobium binae |
| 107 | 2776568 | 2776795 | - | NZ_CP071454.1 | Rhizobium lentis |
| 108 | 601189 | 601440 | - | NZ_CP034998.1 | Rhizobium acidisoli |
| 109 | 1639675 | 1639902 | + | NZ_CP054021.1 | Rhizobium indicum |
| 110 | 1158147 | 1158398 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 111 | 400744 | 400998 | - | NZ_CP053856.1 | Rhizobium pusense |
| 112 | 396981 | 397235 | - | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 113 | 1341854 | 1342108 | + | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 114 | 971126 | 971377 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 115 | 2393557 | 2393808 | - | NC_007794.1 | Novosphingobium aromaticivorans DSM 12444 |
| 116 | 2831638 | 2831853 | + | NZ_CP053086.1 | Pelagibacterium halotolerans |
| 117 | 805216 | 805470 | - | NZ_LR723670.1 | Pseudorhizobium flavum |
| 118 | 511305 | 511505 | - | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 119 | 1397229 | 1397477 | + | NZ_CP047045.1 | Terricaulis silvestris |
| 120 | 170531 | 170731 | - | NZ_CP053562.1 | Thioclava electrotropha |
| 121 | 759638 | 759868 | + | NC_016027.1 | Komagataeibacter medellinensis NBRC 3288 |
| 122 | 2610978 | 2611232 | + | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 123 | 917806 | 918006 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 124 | 944538 | 944789 | - | NZ_CP071612.1 | Rhizobium bangladeshense |
| 125 | 1143511 | 1143711 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 126 | 982128 | 982379 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 127 | 578548 | 578790 | - | NZ_CP032125.1 | Profundibacter amoris |
| 128 | 4684897 | 4685142 | + | NC_014217.1 | Starkeya novella DSM 506 |
| 129 | 3109465 | 3109683 | + | NZ_CP072611.1 | Aureimonas populi |
| 130 | 20358 | 20603 | + | NC_009511.1 | Sphingomonas wittichii RW1 |
| 131 | 1583523 | 1583738 | - | NZ_CP039964.1 | Pseudorhodobacter turbinis |
| 132 | 79955 | 80155 | + | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 133 | 5013674 | 5013889 | + | NC_020908.1 | Octadecabacter arcticus 238 |
| 134 | 2347555 | 2347800 | + | NZ_CP023449.1 | Rhizorhabdus dicambivorans |
| 135 | 2444113 | 2444352 | + | NZ_CP020470.1 | Rhodobacter blasticus |
| 136 | 467612 | 467830 | + | NC_014932.1 | Bartonella clarridgeiae 73 |
| 137 | 1295962 | 1296180 | + | NZ_CP044117.1 | Roseomonas mucosa |
| 138 | 579917 | 580147 | + | NZ_CP019875.1 | Komagataeibacter nataicola |
| 139 | 4502756 | 4502971 | + | NC_020911.1 | Octadecabacter antarcticus 307 |
| 140 | 270485 | 270685 | - | NC_003911.12 | Ruegeria pomeroyi DSS-3 |
| 141 | 317028 | 317228 | + | NZ_CP027668.1 | Phreatobacter cathodiphilus |
| 142 | 4115340 | 4115567 | + | NZ_CP039690.1 | Phreatobacter stygius |
| 143 | 2603787 | 2604041 | - | NZ_CP010803.1 | Martelella endophytica |
| 144 | 257073 | 257309 | + | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
| 145 | 3730968 | 3731186 | + | NZ_CP048788.1 | Roseobacter ponti |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048815.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00850.21 | 0.69 | 100 | 39 | same-strand | Histone deacetylase domain |
| 2 | PF13292.8 | 0.81 | 118 | 1026.0 | same-strand | 1-deoxy-D-xylulose-5-phosphate synthase |
| 3 | PF02779.26 | 0.81 | 118 | 1026.0 | same-strand | Transketolase, pyrimidine binding domain |
| 4 | PF02780.22 | 0.82 | 119 | 1033 | same-strand | Transketolase, C-terminal domain |
++ More..