Result : A0M0D8
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 30S ribosomal protein S18 |
| NCBI Accession ID | CU207366.1 |
| Organism | Gramella forsetii (strain KT0803) |
| Left | 1178798 |
| Right | 1179097 |
| Strand | + |
| Nucleotide Sequence | ATGGCAACATCTATTGAACAACAAGCAAAAGGAAAAAAAGACGGAGAGATCAGGTATCTTACTCCTCTTAATATAGAGACTACCAAGGCTAAGAAATACTGTAGGTTTAAAAGATCGGGTATCAAGTATATCGATTATAAAGATCCAGATTTCTTAATGGGCTTTGTAAACGAACAGGGTAAATTGTTACCTCGTCGTTTAACAGGTACTTCTTTGAAGTTCCAGAGAAAAGTGGCTACAGCCGTAAAACGTGCTCGTCACTTAGCATTAATGCCTTACGTAGGTGATTTATTAAAATAA |
| Sequence | MATSIEQQAKGKKDGEIRYLTPLNIETTKAKKYCRFKRSGIKYIDYKDPDFLMGFVNEQGKLLPRRLTGTSLKFQRKVATAVKRARHLALMPYVGDLLK |
| Source of smORF | Swiss-Prot |
| Function | Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit. {ECO:0000255|HAMAP-Rule:MF_00270}. |
| Pubmed ID | 17107561 |
| Domain | CDD:412341 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | A0M0D8 |
| ORF Length (Amino Acid) | 99 |
++ More..
| Conservation Analysis |
No. of Species: 191
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1178798 | 1179097 | + | NC_008571.1 | Gramella forsetii KT0803 |
| 2 | 999054 | 999353 | - | NZ_CP018153.1 | Gramella salexigens |
| 3 | 3559191 | 3559490 | - | NZ_CP028136.1 | Gramella fulva |
| 4 | 3319030 | 3319329 | + | NZ_CP016359.1 | Gramella flava JLT2011 |
| 5 | 2273499 | 2273798 | + | NC_014041.1 | Zunongwangia profunda SM-A87 |
| 6 | 511124 | 511420 | - | NZ_CP040812.1 | Antarcticibacterium flavum |
| 7 | 723390 | 723686 | + | NZ_CP042476.1 | Antarcticibacterium arcticum |
| 8 | 1186932 | 1187228 | - | NZ_CP019288.1 | Kordia antarctica |
| 9 | 310952 | 311251 | - | NZ_CP039456.1 | Changchengzhania lutea |
| 10 | 23259 | 23501 | - | NC_015945.1 | Muricauda ruestringensis DSM 13258 |
| 11 | 335000 | 335296 | - | NC_015167.1 | Cellulophaga lytica DSM 7489 |
| 12 | 44316 | 44558 | - | NZ_CP030104.1 | Flagellimonas maritima |
| 13 | 1028636 | 1028929 | + | NZ_CP022389.1 | Capnocytophaga canimorsus |
| 14 | 4021335 | 4021631 | - | NZ_CP025938.1 | Tamlana carrageenivorans |
| 15 | 1135268 | 1135564 | - | NZ_CP025791.1 | Flavivirga eckloniae |
| 16 | 2101738 | 2102034 | + | NZ_CP007202.1 | Siansivirga zeaxanthinifaciens CC-SAMT-1 |
| 17 | 28612 | 28908 | - | NZ_CP011071.1 | Muricauda lutaonensis |
| 18 | 932759 | 933055 | - | NZ_CP012898.1 | Algibacter alginicilyticus |
| 19 | 4149491 | 4149787 | - | NZ_CP009976.1 | Cellulophaga baltica 18 |
| 20 | 1088017 | 1088313 | + | NZ_CP053352.1 | Winogradskyella helgolandensis |
| 21 | 104240 | 104482 | - | NZ_CP058595.1 | Costertonia aggregata |
| 22 | 35762 | 36058 | - | NC_014934.1 | Cellulophaga algicola DSM 14237 |
| 23 | 2814332 | 2814628 | - | NC_013222.1 | Robiginitalea biformata HTCC2501 |
| 24 | 1945204 | 1945500 | - | NZ_CP031188.1 | Flavobacterium arcticum |
| 25 | 2309887 | 2310183 | + | NZ_CP042831.1 | Flavobacterium alkalisoli |
| 26 | 3554641 | 3554937 | - | NZ_CP041637.1 | Formosa sediminum |
| 27 | 1548280 | 1548576 | + | NZ_CP053348.1 | Winogradskyella forsetii |
| 28 | 2634982 | 2635278 | - | NZ_CP053351.1 | Winogradskyella schleiferi |
| 29 | 3119048 | 3119344 | + | NZ_CP029186.1 | Flavobacterium album |
| 30 | 2102361 | 2102654 | + | NZ_CP022378.1 | Capnocytophaga cynodegmi |
| 31 | 623375 | 623668 | - | NZ_CP022387.1 | Capnocytophaga stomatis |
| 32 | 3510825 | 3511121 | - | NZ_CP020919.1 | Flavobacterium kingsejongi |
| 33 | 2085703 | 2085999 | - | NZ_CP034549.1 | Nonlabens ponticola |
| 34 | 2558535 | 2558831 | + | NZ_CP032050.1 | Euzebyella marina |
| 35 | 1266489 | 1266785 | - | NZ_CP019342.1 | Nonlabens tegetincola |
| 36 | 3358557 | 3358853 | - | NZ_CP029187.1 | Flavobacterium pallidum |
| 37 | 3997867 | 3998163 | + | NZ_CP022957.1 | Maribacter cobaltidurans |
| 38 | 26934 | 27230 | - | NC_015844.1 | Zobellia galactanivorans |
| 39 | 2183514 | 2183816 | + | NC_014230.1 | Croceibacter atlanticus HTCC2559 |
| 40 | 3310974 | 3311270 | - | NZ_CP010817.1 | Myroides profundi |
| 41 | 4159221 | 4159517 | - | NC_009441.1 | Flavobacterium johnsoniae UW101 |
| 42 | 5053629 | 5053925 | - | NZ_CP016907.1 | Flavobacterium anhuiense |
| 43 | 50702 | 50998 | - | NZ_CP061703.1 | Mesoflavibacter profundi |
| 44 | 5065333 | 5065629 | - | NZ_CP043612.1 | Flavobacterium nitrogenifigens |
| 45 | 3251863 | 3252159 | + | NZ_CP029255.1 | Flavobacterium crocinum |
| 46 | 2353729 | 2354025 | + | NZ_CP039934.1 | Myroides fluvii |
| 47 | 2593509 | 2593805 | + | NC_018013.1 | Aequorivita sublithincola DSM 14238 |
| 48 | 2293145 | 2293441 | + | NZ_CP015125.1 | Dokdonia donghaensis DSW-1 |
| 49 | 1386390 | 1386686 | + | NZ_CP019352.1 | Lacinutrix venerupis |
| 50 | 2609755 | 2610051 | + | NZ_CP029463.1 | Flavobacterium sediminis |
| 51 | 3225366 | 3225662 | + | NC_020156.1 | Nonlabens dokdonensis DSW-6 |
| 52 | 736377 | 736670 | - | NZ_CP022386.1 | Capnocytophaga gingivalis |
| 53 | 2021133 | 2021426 | - | NC_017025.1 | Flavobacterium indicum GPTSA100-9 = DSM 17447 |
| 54 | 3278133 | 3278429 | - | NZ_CP028811.1 | Flavobacterium magnum |
| 55 | 3045998 | 3046294 | - | NZ_CP054494.1 | Flavobacterium columnare |
| 56 | 2199336 | 2199632 | - | NC_016001.1 | Flavobacterium branchiophilum FL-15 |
| 57 | 3666447 | 3666743 | - | NZ_CP017774.1 | Flavobacterium commune |
| 58 | 985401 | 985697 | - | NZ_CP037933.1 | Flavobacterium nackdongense |
| 59 | 1954564 | 1954860 | + | NZ_CP017688.1 | Flavobacterium crassostreae |
| 60 | 3043791 | 3044087 | + | NZ_CP020918.1 | Flavobacterium faecale |
| 61 | 3707956 | 3708252 | - | NZ_CP017479.1 | Flavobacterium gilvum |
| 62 | 2155052 | 2155348 | + | NZ_CP038810.1 | Flavobacterium sangjuense |
| 63 | 857833 | 858129 | - | NZ_CP018155.1 | Tenacibaculum todarodis |
| 64 | 2633522 | 2633818 | - | NZ_LT899436.1 | Tenacibaculum jejuense |
| 65 | 3918856 | 3919152 | + | NC_018721.1 | Psychroflexus torquis ATCC 700755 |
| 66 | 3612142 | 3612438 | - | NZ_CP019419.1 | Polaribacter reichenbachii |
| 67 | 1561886 | 1562182 | - | NZ_CP020822.1 | Tenacibaculum maritimum |
| 68 | 537483 | 537779 | + | NZ_CP017477.1 | Polaribacter vadi |
| 69 | 1992907 | 1993185 | + | NC_013162.1 | Capnocytophaga ochracea DSM 7271 |
| 70 | 324295 | 324573 | - | NZ_CP022379.1 | Capnocytophaga sputigena |
| 71 | 2238304 | 2238582 | - | NZ_CP022022.1 | Capnocytophaga endodontalis |
| 72 | 784115 | 784411 | - | NZ_CP061813.1 | Polaribacter haliotis |
| 73 | 637174 | 637470 | + | NZ_CP014224.1 | Wenyingzhuangia fucanilytica |
| 74 | 535817 | 536113 | + | NZ_CP017478.1 | Urechidicola croceus |
| 75 | 263802 | 264080 | - | NZ_LT906449.1 | Capnocytophaga haemolytica |
| 76 | 474080 | 474373 | - | NZ_CP013355.1 | Lutibacter profundi |
| 77 | 1632950 | 1633252 | + | NZ_CP053698.1 | Empedobacter stercoris |
| 78 | 2441114 | 2441419 | + | NZ_CP034930.1 | Apibacter raozihei |
| 79 | 1432883 | 1433185 | - | NZ_LR134404.1 | Weeksella virosa |
| 80 | 2696134 | 2696436 | + | NZ_CP040908.1 | Empedobacter falsenii |
| 81 | 3509172 | 3509474 | + | NZ_CP013210.1 | Empedobacter brevis |
| 82 | 133968 | 134237 | + | NZ_CP045696.1 | Sodaliphilus pleomorphus |
| 83 | 1024895 | 1025182 | + | NZ_LR134441.1 | Kaistella antarctica |
| 84 | 385332 | 385583 | - | NZ_CP063145.1 | Cruoricaptor ignavus |
| 85 | 2420253 | 2420522 | + | NZ_CP015402.2 | Muribaculum intestinale |
| 86 | 1420719 | 1421006 | - | NZ_LR215974.1 | Chryseobacterium taihuense |
| 87 | 36323 | 36610 | - | NZ_LT906465.1 | Chryseobacterium taklimakanense |
| 88 | 2041768 | 2042055 | - | NZ_CP034161.1 | Epilithonimonas vandammei |
| 89 | 679373 | 679660 | - | NZ_CP023049.2 | Chryseobacterium piperi |
| 90 | 4120521 | 4120808 | - | NZ_CP015199.1 | Chryseobacterium glaciei |
| 91 | 1361831 | 1362118 | + | NZ_CP015067.2 | Elizabethkingia anophelis |
| 92 | 2832189 | 2832476 | + | NZ_CP033929.1 | Chryseobacterium indoltheticum |
| 93 | 1201293 | 1201580 | - | NZ_CP014337.1 | Elizabethkingia bruuniana |
| 94 | 794618 | 794905 | - | NZ_CP050995.1 | Chryseobacterium gallinarum |
| 95 | 2075651 | 2075938 | - | NZ_CP033914.1 | Chryseobacterium shandongense |
| 96 | 4169989 | 4170276 | + | NZ_CP033932.1 | Chryseobacterium bernardetii |
| 97 | 1012381 | 1012668 | + | NZ_LR134289.1 | Chryseobacterium gleum |
| 98 | 596386 | 596673 | + | NZ_CP022986.1 | Chryseobacterium camelliae |
| 99 | 2229576 | 2229878 | + | NZ_CP006828.1 | Ornithobacterium rhinotracheale ORT-UMN 88 |
| 100 | 659073 | 659360 | - | NC_017045.1 | Riemerella anatipestifer ATCC 11845 = DSM 15868 |
| 101 | 392256 | 392543 | - | NZ_CP034159.1 | Kaistella carnis |
| 102 | 870205 | 870492 | + | NZ_CP033926.1 | Chryseobacterium joostei |
| 103 | 3938363 | 3938650 | - | NZ_CP033920.1 | Chryseobacterium carnipullorum |
| 104 | 2248295 | 2248564 | + | NZ_LR134506.1 | Porphyromonas cangingivalis |
| 105 | 1705202 | 1705477 | + | NZ_LS483447.1 | Porphyromonas crevioricanis |
| 106 | 847958 | 848227 | + | NZ_LT906459.1 | Odoribacter splanchnicus |
| 107 | 969090 | 969377 | + | NZ_LR134503.1 | Kaistella jeonii |
| 108 | 1346153 | 1346422 | - | NZ_CP041345.1 | Tenuifilum thalassicum |
| 109 | 226756 | 227043 | - | NZ_AP014564.1 | Ichthyobacterium seriolicida |
| 110 | 2046415 | 2046687 | - | NZ_LR134384.1 | Prevotella oris |
| 111 | 3286218 | 3286505 | + | NZ_LR134386.1 | Chryseobacterium nakagawai |
| 112 | 4276493 | 4276780 | + | NZ_CP033924.1 | Chryseobacterium lactis |
| 113 | 606774 | 607061 | + | NC_016599.1 | Owenweeksia hongkongensis DSM 17368 |
| 114 | 121505 | 121768 | - | NZ_CP034120.1 | Glaciecola amylolytica |
| 115 | 1132307 | 1132570 | + | NC_015321.1 | Fluviicola taffensis DSM 16823 |
| 116 | 4090568 | 4090831 | + | NZ_AP017313.1 | Mucilaginibacter gotjawali |
| 117 | 852832 | 853074 | - | NC_016940.1 | Saprospira grandis str. Lewin |
| 118 | 6027063 | 6027305 | - | NZ_CP032382.1 | Chryseolinea soli |
| 119 | 4176376 | 4176642 | - | NC_015510.1 | Haliscomenobacter hydrossis DSM 1100 |
| 120 | 1529624 | 1529887 | + | NZ_CP022743.1 | Mucilaginibacter xinganensis |
| 121 | 428541 | 428804 | + | NC_017770.1 | Solitalea canadensis DSM 3403 |
| 122 | 3444944 | 3445204 | + | NZ_CP066775.1 | Mucilaginibacter ginkgonis |
| 123 | 752145 | 752408 | + | NZ_CP060723.1 | Pedobacter roseus |
| 124 | 631294 | 631557 | + | NZ_LR590484.1 | Sphingobacterium thalpophilum |
| 125 | 320531 | 320794 | - | NZ_CP032869.1 | Mucilaginibacter celer |
| 126 | 3465695 | 3465958 | + | NZ_CP071878.1 | Mucilaginibacter gossypii |
| 127 | 4665153 | 4665416 | + | NZ_CP042437.1 | Mucilaginibacter ginsenosidivorax |
| 128 | 958854 | 959117 | + | NZ_CP054139.1 | Mucilaginibacter mali |
| 129 | 4906713 | 4906976 | - | NZ_CP042436.1 | Mucilaginibacter ginsenosidivorans |
| 130 | 503201 | 503467 | - | NZ_CP042434.1 | Arachidicoccus ginsenosidivorans |
| 131 | 2101519 | 2101785 | - | NZ_CP023777.1 | Chitinophaga caeni |
| 132 | 2179982 | 2180245 | - | NZ_CP038029.1 | Sphingobacterium psychroaquaticum |
| 133 | 700372 | 700644 | + | NC_010729.1 | Porphyromonas gingivalis ATCC 33277 |
| 134 | 863527 | 863790 | + | NC_013061.1 | Pedobacter heparinus DSM 2366 |
| 135 | 5143925 | 5144188 | + | NZ_CP024091.1 | Pedobacter ginsengisoli |
| 136 | 1623232 | 1623498 | + | NC_015501.1 | Porphyromonas asaccharolytica DSM 20707 |
| 137 | 1006534 | 1006800 | + | NZ_CP032489.1 | Arachidicoccus soli |
| 138 | 3632593 | 3632859 | + | NZ_CP048113.1 | Chitinophaga agri |
| 139 | 4926551 | 4926817 | + | NZ_CP032157.1 | Paraflavitalea soli |
| 140 | 8762769 | 8763035 | + | NC_013132.1 | Chitinophaga pinensis DSM 2588 |
| 141 | 5487242 | 5487508 | + | NZ_AP017422.1 | Filimonas lacunae |
| 142 | 2879933 | 2880196 | + | NZ_CP049246.1 | Sphingobacterium lactis |
| 143 | 2142399 | 2142662 | - | NZ_CP030848.1 | Sphingobacterium hotanense |
| 144 | 6361862 | 6362128 | + | NC_016609.1 | Niastella koreensis GR20-10 |
| 145 | 2861888 | 2862139 | - | NZ_CP055156.1 | Adhaeribacter swui |
| 146 | 789483 | 789734 | - | NZ_CP055153.1 | Adhaeribacter radiodurans |
| 147 | 866010 | 866276 | + | NZ_LT608328.1 | Petrimonas mucosa |
| 148 | 4158390 | 4158653 | - | NZ_CP007035.1 | Niabella soli DSM 19437 |
| 149 | 3496088 | 3496354 | - | NZ_LT605205.1 | Proteiniphilum saccharofermentans |
| 150 | 1156738 | 1157007 | - | NC_015164.1 | Phocaeicola salanitronis DSM 18170 |
| 151 | 3970786 | 3971052 | + | NZ_CP042435.1 | Panacibacter ginsenosidivorans |
| 152 | 3275676 | 3275948 | - | NZ_CP015401.2 | Bacteroides caecimuris |
| 153 | 4201577 | 4201840 | + | NZ_CP015772.1 | Niabella ginsenosidivorans |
| 154 | 8364 | 8633 | - | NZ_CP021904.1 | Alkalitalea saponilacus |
| 155 | 2770237 | 2770509 | - | NZ_CP027231.1 | Bacteroides zoogleoformans |
| 156 | 49165 | 49437 | - | NZ_CP027234.1 | Bacteroides heparinolyticus |
| 157 | 2814393 | 2814662 | - | NZ_CP069440.1 | Phocaeicola coprophilus |
| 158 | 15735 | 16004 | - | NC_009614.1 | Phocaeicola vulgatus ATCC 8482 |
| 159 | 15712 | 15981 | - | NZ_LR699004.1 | Phocaeicola dorei |
| 160 | 2098150 | 2098416 | - | NZ_CP011390.1 | Flavisolibacter tropicus |
| 161 | 392132 | 392401 | - | NC_014734.1 | Paludibacter propionicigenes WB4 |
| 162 | 2731502 | 2731774 | - | NZ_CP012938.1 | Bacteroides ovatus |
| 163 | 24230 | 24502 | - | NZ_CP040530.1 | Bacteroides thetaiotaomicron |
| 164 | 5128180 | 5128449 | + | NZ_AP018042.1 | Labilibaculum antarcticum |
| 165 | 4274432 | 4274704 | - | NZ_LN877293.1 | Bacteroides fragilis |
| 166 | 321092 | 321361 | + | NZ_CP054012.1 | Parabacteroides distasonis |
| 167 | 4804008 | 4804274 | - | NZ_CP042433.1 | Flavisolibacter ginsenosidimutans |
| 168 | 24595 | 24867 | - | NC_014933.1 | Bacteroides helcogenes P 36-108 |
| 169 | 2670406 | 2670669 | - | NC_015177.1 | Pseudopedobacter saltans DSM 12145 |
| 170 | 545536 | 545805 | + | NZ_CP032819.1 | Butyricimonas faecalis |
| 171 | 2939882 | 2940151 | - | NZ_CP069450.1 | Butyricimonas virosa |
| 172 | 497688 | 497957 | + | NZ_CP007034.1 | Barnesiella viscericola DSM 18177 |
| 173 | 1772643 | 1772909 | - | NZ_LR215980.1 | Paraprevotella xylaniphila YIT 11841 |
| 174 | 4400868 | 4401134 | + | NZ_CP037755.1 | Pseudocnuella soli |
| 175 | 1973462 | 1973734 | + | NZ_CP013195.1 | Prevotella enoeca |
| 176 | 318200 | 318496 | - | NC_020510.1 | Blattabacterium cuenoti BPAA |
| 177 | 728197 | 728463 | + | NC_014033.1 | Prevotella ruminicola 23 |
| 178 | 331618 | 331926 | + | NZ_CP029844.1 | Blattabacterium clevelandi |
| 179 | 46435 | 46704 | - | NZ_CP013118.1 | Salinivirga cyanobacteriivorans |
| 180 | 323319 | 323627 | + | NC_016621.1 | Blattabacterium sp. (Cryptocercus punctulatus) str. Cpu |
| 181 | 2507262 | 2507531 | - | NZ_AP023049.1 | Alistipes indistinctus |
| 182 | 153843 | 154112 | + | NZ_CP023864.1 | Prevotella jejuni |
| 183 | 4271252 | 4271518 | - | NZ_CP007451.1 | Draconibacterium orientale |
| 184 | 297608 | 297877 | + | NZ_CP012075.1 | Prevotella fusca JCM 17724 |
| 185 | 345063 | 345332 | + | NC_014371.1 | Prevotella melaninogenica ATCC 25845 |
| 186 | 1442841 | 1443113 | + | NZ_CP024727.1 | Prevotella intermedia |
| 187 | 702414 | 702692 | + | NZ_LR027382.1 | Alistipes megaguti |
| 188 | 1013071 | 1013349 | + | NZ_AP019736.1 | Alistipes dispar |
| 189 | 1220935 | 1221213 | + | NC_018011.1 | Alistipes finegoldii DSM 17242 |
| 190 | 1971482 | 1971763 | + | NZ_AP019735.1 | Alistipes communis |
| 191 | 793480 | 793755 | + | NZ_AP018150.1 | Mycoavidus cysteinexigens |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_008571.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01250.19 | 1.0 | 191 | 4 | same-strand | Ribosomal protein S6 |
| 2 | PF03948.16 | 0.99 | 190 | 18.0 | same-strand | Ribosomal protein L9, C-terminal domain |
| 3 | PF01281.21 | 1.0 | 191 | 18 | same-strand | Ribosomal protein L9, N-terminal domain |
++ More..