Result : EXP00051
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00051 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 1617715 |
| Right | 1617771 |
| Strand | - |
| Nucleotide Sequence | GTGTGTCCCTTGATCTTGTTTTTCGTCGCGCCCGGCTCGTCGCGGCTGCCGCGCTGA |
| Sequence | VCPLILFFVAPGSSRLPR |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 26536359 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 18 |
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| Conservation Analysis |
No. of Species: 2
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1692479 | 1692535 | - | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 6690218 | 6690274 | + | NZ_CP012150.1 | Mycobacterium goodii |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03118.17 | 1.0 | 2 | 2884.0 | opposite-strand | Bacterial RNA polymerase, alpha chain C terminal domain |
| 2 | PF01000.28 | 1.0 | 2 | 2884.0 | opposite-strand | RNA polymerase Rpb3/RpoA insert domain |
| 3 | PF01193.26 | 1.0 | 2 | 2884.0 | opposite-strand | RNA polymerase Rpb3/Rpb11 dimerisation domain |
| 4 | PF01196.21 | 1.0 | 2 | 2270.5 | opposite-strand | Ribosomal protein L17 |
| 5 | PF01416.22 | 1.0 | 2 | 1377.0 | opposite-strand | tRNA pseudouridine synthase |
| 6 | PF01083.24 | 1.0 | 2 | 35.5 | same-strand | Cutinase |
| 7 | PF00892.22 | 1.0 | 2 | 722.5 | same-strand | EamA-like transporter family |
| 8 | PF11706.10 | 1.0 | 2 | 1846.0 | opposite-strand | CGNR zinc finger |
| 9 | PF07336.13 | 1.0 | 2 | 1846.0 | opposite-strand | Putative stress-induced transcription regulator |
| 10 | PF05108.15 | 1.0 | 2 | 2732.0 | opposite-strand | Type VII secretion system ESX-1, transport TM domain B |
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