* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF03118.17
|
1.0
|
2
|
2884.0
|
opposite-strand
|
Bacterial RNA polymerase, alpha chain C terminal domain
|
2
|
PF01000.28
|
1.0
|
2
|
2884.0
|
opposite-strand
|
RNA polymerase Rpb3/RpoA insert domain
|
3
|
PF01193.26
|
1.0
|
2
|
2884.0
|
opposite-strand
|
RNA polymerase Rpb3/Rpb11 dimerisation domain
|
4
|
PF01196.21
|
1.0
|
2
|
2270.5
|
opposite-strand
|
Ribosomal protein L17
|
5
|
PF01416.22
|
1.0
|
2
|
1377.0
|
opposite-strand
|
tRNA pseudouridine synthase
|
6
|
PF01083.24
|
1.0
|
2
|
35.5
|
same-strand
|
Cutinase
|
7
|
PF00892.22
|
1.0
|
2
|
722.5
|
same-strand
|
EamA-like transporter family
|
8
|
PF11706.10
|
1.0
|
2
|
1846.0
|
opposite-strand
|
CGNR zinc finger
|
9
|
PF07336.13
|
1.0
|
2
|
1846.0
|
opposite-strand
|
Putative stress-induced transcription regulator
|
10
|
PF05108.15
|
1.0
|
2
|
2732.0
|
opposite-strand
|
Type VII secretion system ESX-1, transport TM domain B
|
++ More..