* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF13662.8
|
1.0
|
2
|
3103.0
|
opposite-strand
|
Toprim domain
|
2
|
PF02132.17
|
1.0
|
2
|
3103.0
|
opposite-strand
|
RecR protein
|
3
|
PF01751.24
|
1.0
|
2
|
3103.0
|
opposite-strand
|
Toprim domain
|
4
|
PF02575.18
|
1.0
|
2
|
2784.0
|
opposite-strand
|
YbaB/EbfC DNA-binding family
|
5
|
PF01520.20
|
1.0
|
2
|
1840.0
|
same-strand
|
N-acetylmuramoyl-L-alanine amidase
|
6
|
PF10604.11
|
1.0
|
2
|
1378.0
|
opposite-strand
|
Polyketide cyclase / dehydrase and lipid transport
|
7
|
PF02353.22
|
1.0
|
2
|
29.0
|
same-strand
|
Mycolic acid cyclopropane synthetase
|
8
|
PF08241.14
|
1.0
|
2
|
29.0
|
same-strand
|
Methyltransferase domain
|
9
|
PF13649.8
|
1.0
|
2
|
29.0
|
same-strand
|
Methyltransferase domain
|
10
|
PF08242.14
|
1.0
|
2
|
29.0
|
same-strand
|
Methyltransferase domain
|
11
|
PF13177.8
|
1.0
|
2
|
2297.0
|
opposite-strand
|
DNA polymerase III, delta subunit
|
12
|
PF12169.10
|
1.0
|
2
|
2297.0
|
opposite-strand
|
DNA polymerase III subunits gamma and tau domain III
|
13
|
PF00004.31
|
1.0
|
2
|
2297.0
|
opposite-strand
|
ATPase family associated with various cellular activities (AAA)
|
14
|
PF13401.8
|
1.0
|
2
|
2297.0
|
opposite-strand
|
AAA domain
|
15
|
PF12897.9
|
1.0
|
2
|
4313.5
|
opposite-strand
|
Aspartate amino-transferase
|
16
|
PF00155.23
|
1.0
|
2
|
3402
|
opposite-strand
|
Aminotransferase class I and II
|
++ More..