Result : EXP00009
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | EXP00009 |
| NCBI Accession ID | CP000480.1 |
| Organism | Mycolicibacterium smegmatis MC2 155 |
| Left | 1458621 |
| Right | 1458761 |
| Strand | + |
| Nucleotide Sequence | GTGACTGTCGAGGCGGAACGCCCGATACCCATCACAAGGAGGCATGCATGGCCAAGGCTGACAAGGCCACGGCGGTTGCCGACATTGCCGAGCAGTTCAAGGCGTCGACGGCCACCGTCGTCACCGAGTACCGCGGGCTGA |
| Sequence | VTVEAERPIPITRRHAWPRLTRPRRLPTLPSSSRRRRPPSSPSTAG |
| Source of smORF | Ribo-seq |
| Function | |
| Pubmed ID | 26536359 |
| Domain | |
| Functional Category | Function not yet assigned |
| Uniprot ID | |
| ORF Length (Amino Acid) | 46 |
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| Conservation Analysis |
No. of Species: 3
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1535790 | 1535930 | + | NZ_LN831039.1 | Mycolicibacterium smegmatis |
| 2 | 4336804 | 4336932 | + | NZ_AP022567.1 | Mycolicibacterium mageritense |
| 3 | 3802778 | 3802903 | - | NZ_AP022617.1 | Mycolicibacterium monacense |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LN831039.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF03372.25 | 0.67 | 2 | 6102.0 | same-strand | Endonuclease/Exonuclease/phosphatase family |
| 2 | PF01074.24 | 1.0 | 3 | 1990 | same-strand | Glycosyl hydrolases family 38 N-terminal domain |
| 3 | PF10633.11 | 1.0 | 3 | 1990 | same-strand | NPCBM-associated, NEW3 domain of alpha-galactosidase |
| 4 | PF09261.13 | 1.0 | 3 | 1990 | same-strand | Alpha mannosidase middle domain |
| 5 | PF00480.22 | 1.0 | 3 | 475 | same-strand | ROK family |
| 6 | PF00466.22 | 1.0 | 3 | -93 | same-strand | Ribosomal protein L10 |
| 7 | PF00542.21 | 1.0 | 3 | 492 | same-strand | Ribosomal protein L7/L12 C-terminal domain |
| 8 | PF16320.7 | 1.0 | 3 | 492 | same-strand | Ribosomal protein L7/L12 dimerisation domain |
| 9 | PF00005.29 | 1.0 | 3 | 1067 | same-strand | ABC transporter |
| 10 | PF00562.30 | 1.0 | 3 | 2690 | same-strand | RNA polymerase Rpb2, domain 6 |
| 11 | PF10385.11 | 1.0 | 3 | 2690 | same-strand | RNA polymerase beta subunit external 1 domain |
| 12 | PF04565.18 | 1.0 | 3 | 2690 | same-strand | RNA polymerase Rpb2, domain 3 |
| 13 | PF04561.16 | 1.0 | 3 | 2690 | same-strand | RNA polymerase Rpb2, domain 2 |
| 14 | PF04560.22 | 1.0 | 3 | 2690 | same-strand | RNA polymerase Rpb2, domain 7 |
| 15 | PF04563.17 | 0.67 | 2 | 2788.5 | same-strand | RNA polymerase beta subunit |
| 16 | PF04997.14 | 1.0 | 3 | 6263 | same-strand | RNA polymerase Rpb1, domain 1 |
| 17 | PF04998.19 | 1.0 | 3 | 6263 | same-strand | RNA polymerase Rpb1, domain 5 |
| 18 | PF00623.22 | 1.0 | 3 | 6263 | same-strand | RNA polymerase Rpb1, domain 2 |
| 19 | PF04983.20 | 1.0 | 3 | 6263 | same-strand | RNA polymerase Rpb1, domain 3 |
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