* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP012150.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00083.26
|
1.0
|
2
|
4318.0
|
opposite-strand
|
Sugar (and other) transporter
|
2
|
PF07690.18
|
1.0
|
2
|
4318.0
|
opposite-strand
|
Major Facilitator Superfamily
|
3
|
PF00072.26
|
1.0
|
2
|
1748.5
|
both-strands
|
Response regulator receiver domain
|
4
|
PF00196.21
|
1.0
|
2
|
3540.5
|
opposite-strand
|
Bacterial regulatory proteins, luxR family
|
5
|
PF08281.14
|
1.0
|
2
|
3540.5
|
opposite-strand
|
Sigma-70, region 4
|
6
|
PF06808.14
|
1.0
|
2
|
1492.0
|
same-strand
|
Tripartite ATP-independent periplasmic transporter, DctM component
|
7
|
PF16868.7
|
1.0
|
2
|
440.0
|
same-strand
|
NMT1-like family
|
8
|
PF13185.8
|
1.0
|
2
|
163.5
|
opposite-strand
|
GAF domain
|
9
|
PF13493.8
|
1.0
|
2
|
163.5
|
opposite-strand
|
Domain of unknown function (DUF4118)
|
10
|
PF01590.28
|
1.0
|
2
|
163.5
|
opposite-strand
|
GAF domain
|
11
|
PF07730.15
|
1.0
|
2
|
163.5
|
opposite-strand
|
Histidine kinase
|
12
|
PF13492.8
|
1.0
|
2
|
163.5
|
opposite-strand
|
GAF domain
|
13
|
PF14012.8
|
1.0
|
2
|
3201.5
|
same-strand
|
Protein of unknown function (DUF4229)
|
++ More..