Result : HVO_2400
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | HVO_2400 |
| NCBI Accession ID | CP001956.1 |
| Organism | Haloferax volcanii DS2 |
| Left | 2268759 |
| Right | 2268935 |
| Strand | + |
| Nucleotide Sequence | ATGAGCGACCTCGAAATCGAACGCGAGTGCCCGGCCTGCGGCAACGACACGTTCTACCTCGCCGCCAGCATGGAGATTCACCTCGGCACGAAGACGAAGTGGCACTGCACGGAGTGCGACTACGGTTACATCCACATCACGGACGACATCGAGACGTACGCGAAGGCCGAAGCGTAA |
| Sequence | MSDLEIERECPACGNDTFYLAASMEIHLGTKTKWHCTECDYGYIHITDDIETYAKAEA |
| Source of smORF | Literature-mining |
| Function | The deletion mutant has better ability to grow in glycerol-containing medium as compared to wild-type. |
| Pubmed ID | 31083437 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | |
| ORF Length (Amino Acid) | 58 |
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| Conservation Analysis |
No. of Species: 24
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2364384 | 2364560 | + | NZ_CP011947.1 | Haloferax gibbonsii |
| 2 | 2268759 | 2268935 | + | NC_013967.1 | Haloferax volcanii DS2 |
| 3 | 3084299 | 3084475 | + | NZ_CP048738.1 | Haloferax alexandrinus |
| 4 | 2877774 | 2877950 | - | NZ_CP039139.1 | Haloferax mediterranei ATCC 33500 |
| 5 | 93691 | 93858 | - | NC_015666.1 | Halopiger xanaduensis SH-6 |
| 6 | 3626229 | 3626387 | - | NZ_CP058335.1 | Natronomonas salina |
| 7 | 778000 | 778152 | + | NC_014729.1 | Halogeometricum borinquense DSM 11551 |
| 8 | 3670181 | 3670360 | + | NZ_CP058579.1 | Halobaculum salinum |
| 9 | 4288084 | 4288257 | - | NZ_CP058910.1 | Halosimplex rubrum |
| 10 | 1748465 | 1748635 | + | NZ_LN831302.1 | Halobacterium hubeiense |
| 11 | 2735102 | 2735266 | + | NC_019974.1 | Natronococcus occultus SP4 |
| 12 | 383337 | 383510 | + | NC_013922.1 | Natrialba magadii ATCC 43099 |
| 13 | 701783 | 701947 | + | NZ_CP058334.1 | Natronomonas halophila |
| 14 | 1361553 | 1361729 | - | NZ_CP024047.1 | Natrarchaeobaculum sulfurireducens |
| 15 | 2800504 | 2800683 | - | NC_019792.1 | Natronobacterium gregoryi SP2 |
| 16 | 1705234 | 1705398 | + | NC_019964.1 | Halovivax ruber XH-70 |
| 17 | 603905 | 604075 | - | NZ_CP073366.1 | Haloarcula sinaiiensis ATCC 33800 |
| 18 | 1329800 | 1329970 | + | NC_006396.1 | Haloarcula marismortui ATCC 43049 |
| 19 | 1983447 | 1983617 | + | NZ_CP019154.1 | Haloarcula taiwanensis |
| 20 | 1810994 | 1811158 | - | NC_013202.1 | Halomicrobium mukohataei DSM 12286 |
| 21 | 2112830 | 2113009 | + | NC_008212.1 | Haloquadratum walsbyi DSM 16790 |
| 22 | 2845236 | 2845391 | + | NZ_CP026309.1 | Salinigranum rubrum |
| 23 | 2179448 | 2179594 | + | NZ_CP034940.1 | Halorubrum ezzemoulense |
| 24 | 1635655 | 1635822 | + | NZ_CP011564.1 | Halanaeroarchaeum sulfurireducens |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP011947.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02347.18 | 0.71 | 17 | 2020 | opposite-strand | Glycine cleavage system P-protein |
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