Result : HVO_1359
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | HVO_1359 |
| NCBI Accession ID | CP001956.1 |
| Organism | Haloferax volcanii DS2 |
| Left | 1238925 |
| Right | 1239131 |
| Strand | - |
| Nucleotide Sequence | ATGTCGAAGAGTAAAAGCAGTCCCCGAAACAACGAGTTCGTCGAAGAGTGCCCGTCGTGTGAGTCGCGGACGCCGCACGACGTCTCCATCGAAATCAAGACGGAGAGTCGGAAGCGAGAGAACCGTCAGTTCTCTCGCGAGCCGTACCGCGTCACGCGCTGTACGCGCTGTGGCAACACGCAGTCGCAGCGCATGAACGACGCGTGA |
| Sequence | MSKSKSSPRNNEFVEECPSCESRTPHDVSIEIKTESRKRENRQFSREPYRVTRCTRCGNTQSQRMNDA |
| Source of smORF | Literature-mining |
| Function | The deletion mutant is inhibited in its ability to grow in glycerol-containing medium and in the presence of bile acids. |
| Pubmed ID | 31083437 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | |
| ORF Length (Amino Acid) | 68 |
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| Conservation Analysis |
No. of Species: 36
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2028700 | 2028906 | - | NZ_CP048738.1 | Haloferax alexandrinus |
| 2 | 1238925 | 1239131 | - | NC_013967.1 | Haloferax volcanii DS2 |
| 3 | 1256989 | 1257195 | - | NZ_CP011947.1 | Haloferax gibbonsii |
| 4 | 1992852 | 1993058 | - | NZ_CP039139.1 | Haloferax mediterranei ATCC 33500 |
| 5 | 1794173 | 1794343 | + | NC_014729.1 | Halogeometricum borinquense DSM 11551 |
| 6 | 2053898 | 2054098 | - | NC_008212.1 | Haloquadratum walsbyi DSM 16790 |
| 7 | 584749 | 584919 | - | NC_013743.1 | Haloterrigena turkmenica DSM 5511 |
| 8 | 1994339 | 1994509 | + | NC_013743.1 | Haloterrigena turkmenica DSM 5511 |
| 9 | 1304659 | 1304829 | + | NZ_CP069188.1 | Haloterrigena salifodinae |
| 10 | 3950658 | 3950828 | - | NZ_CP069188.1 | Haloterrigena salifodinae |
| 11 | 382705 | 382905 | - | NC_019974.1 | Natronococcus occultus SP4 |
| 12 | 2993785 | 2993985 | + | NC_019974.1 | Natronococcus occultus SP4 |
| 13 | 646975 | 647145 | + | NZ_CP045488.1 | Natronorubrum aibiense |
| 14 | 1752869 | 1753039 | - | NZ_CP031305.1 | Natronorubrum bangense |
| 15 | 979318 | 979518 | - | NC_019964.1 | Halovivax ruber XH-70 |
| 16 | 807082 | 807282 | - | NC_019964.1 | Halovivax ruber XH-70 |
| 17 | 3379631 | 3379801 | - | NC_019962.1 | Natrinema pellirubrum DSM 15624 |
| 18 | 3032452 | 3032652 | - | NC_013922.1 | Natrialba magadii ATCC 43099 |
| 19 | 2024096 | 2024266 | - | NZ_CP071463.1 | Haloterrigena longa |
| 20 | 3057974 | 3058144 | + | NZ_CP040637.1 | Natrinema pallidum |
| 21 | 1155417 | 1155587 | + | NZ_CP019327.1 | Haloterrigena daqingensis |
| 22 | 2303956 | 2304156 | + | NZ_CP019327.1 | Haloterrigena daqingensis |
| 23 | 1160102 | 1160272 | + | NC_015666.1 | Halopiger xanaduensis SH-6 |
| 24 | 3108084 | 3108254 | + | NZ_CP024047.1 | Natrarchaeobaculum sulfurireducens |
| 25 | 3651356 | 3651556 | - | NZ_CP019893.1 | Natrarchaeobaculum aegyptiacum |
| 26 | 3332967 | 3333137 | - | NZ_CP058335.1 | Natronomonas salina |
| 27 | 389106 | 389306 | - | NZ_CP019285.1 | Halobiforma lacisalsi AJ5 |
| 28 | 2234203 | 2234373 | + | NZ_CP019285.1 | Halobiforma lacisalsi AJ5 |
| 29 | 349662 | 349832 | - | NZ_CP007055.1 | Halostagnicola larsenii XH-48 |
| 30 | 1098372 | 1098572 | - | NC_019792.1 | Natronobacterium gregoryi SP2 |
| 31 | 3486586 | 3486756 | + | NC_019792.1 | Natronobacterium gregoryi SP2 |
| 32 | 1103178 | 1103345 | + | NZ_CP058529.1 | Halobaculum halophilum |
| 33 | 616012 | 616182 | - | NC_015948.1 | Haloarcula hispanica ATCC 33960 |
| 34 | 2003732 | 2003902 | + | NZ_CP073366.1 | Haloarcula sinaiiensis ATCC 33800 |
| 35 | 3026907 | 3027077 | - | NC_006396.1 | Haloarcula marismortui ATCC 43049 |
| 36 | 615934 | 616104 | - | NZ_CP019154.1 | Haloarcula taiwanensis |
| 37 | 1352533 | 1352733 | + | NZ_LN831302.1 | Halobacterium hubeiense |
| 38 | 2925797 | 2925997 | + | NZ_CP081958.1 | Halobaculum magnesiiphilum |
| 39 | 2262149 | 2262316 | - | NZ_CP058579.1 | Halobaculum salinum |
| 40 | 1854994 | 1855164 | + | NC_020388.1 | Natronomonas moolapensis 8.8.11 |
| 41 | 3283588 | 3283758 | - | NZ_CP026309.1 | Salinigranum rubrum |
| 42 | 32662 | 32862 | - | NC_021921.1 | Halorhabdus tiamatea SARL4B |
| 43 | 76264 | 76464 | - | NC_013158.1 | Halorhabdus utahensis DSM 12940 |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_013743.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00557.26 | 0.67 | 24 | 153.5 | opposite-strand | Metallopeptidase family M24 |
| 2 | PF01230.25 | 0.72 | 26 | 285.0 | opposite-strand | HIT domain |
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