* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP048738.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00091.27
|
1.0
|
4
|
2280.5
|
same-strand
|
Tubulin/FtsZ family, GTPase domain
|
2
|
PF08745.13
|
1.0
|
4
|
1495.5
|
same-strand
|
PINc domain ribonuclease
|
3
|
PF12840.9
|
1.0
|
4
|
921
|
opposite-strand
|
Helix-turn-helix domain
|
4
|
PF09339.12
|
0.75
|
3
|
921.0
|
opposite-strand
|
IclR helix-turn-helix domain
|
5
|
PF12802.9
|
1.0
|
4
|
920.5
|
opposite-strand
|
MarR family
|
6
|
PF04967.14
|
1.0
|
4
|
95.0
|
same-strand
|
HTH DNA binding domain
|
7
|
PF00127.22
|
1.0
|
4
|
34.0
|
opposite-strand
|
Copper binding proteins, plastocyanin/azurin family
|
8
|
PF10518.11
|
0.75
|
3
|
34
|
opposite-strand
|
TAT (twin-arginine translocation) pathway signal sequence
|
9
|
PF04055.23
|
1.0
|
4
|
982.0
|
same-strand
|
Radical SAM superfamily
|
10
|
PF13186.8
|
1.0
|
4
|
982.0
|
same-strand
|
Iron-sulfur cluster-binding domain
|
11
|
PF07992.16
|
0.75
|
3
|
2522
|
opposite-strand
|
Pyridine nucleotide-disulphide oxidoreductase
|
12
|
PF00070.29
|
0.75
|
3
|
2522
|
opposite-strand
|
Pyridine nucleotide-disulphide oxidoreductase
|
++ More..