Result : HVO_0416
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | HVO_0416 |
| NCBI Accession ID | CP001956.1 |
| Organism | Haloferax volcanii DS2 |
| Left | 371250 |
| Right | 371426 |
| Strand | - |
| Nucleotide Sequence | ATGGCCTCAGCACCCAGTGACGACTTGTTCGACCAGTTCTTGACCGACCGCGGTCACGAGACAGAACCGGCACGCTGGGACCGATCCTATAACAAGTTGCAGTGTCCCGACTGCGGGGCCCTGCACGACATGGGCGCGGCGACCTGCTCCGTCTGCGGGTGGGTGCCGGAGGCCTGA |
| Sequence | MASAPSDDLFDQFLTDRGHETEPARWDRSYNKLQCPDCGALHDMGAATCSVCGWVPEA |
| Source of smORF | Literature-mining |
| Function | The deletion mutant has increased ability to form biofilm. |
| Pubmed ID | 31083437 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | |
| ORF Length (Amino Acid) | 58 |
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| Conservation Analysis |
No. of Species: 54
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 371250 | 371426 | - | NC_013967.1 | Haloferax volcanii DS2 |
| 2 | 421180 | 421356 | - | NZ_CP048738.1 | Haloferax alexandrinus |
| 3 | 356825 | 357001 | - | NZ_CP011947.1 | Haloferax gibbonsii |
| 4 | 997243 | 997419 | - | NZ_CP039139.1 | Haloferax mediterranei ATCC 33500 |
| 5 | 2524360 | 2524545 | + | NZ_CP034345.1 | Haloplanus rallus |
| 6 | 461411 | 461596 | - | NC_008212.1 | Haloquadratum walsbyi DSM 16790 |
| 7 | 2487657 | 2487833 | + | NC_014297.1 | Halalkalicoccus jeotgali B3 |
| 8 | 2337643 | 2337831 | - | NZ_CP081958.1 | Halobaculum magnesiiphilum |
| 9 | 3224443 | 3224628 | + | NZ_CP034145.1 | Haloplanus aerogenes |
| 10 | 161214 | 161402 | - | NZ_CP031150.1 | Haloplanus rubicundus |
| 11 | 381144 | 381329 | - | NZ_CP026309.1 | Salinigranum rubrum |
| 12 | 2380218 | 2380406 | - | NZ_CP082286.1 | Halobaculum roseum |
| 13 | 3427587 | 3427775 | + | NZ_CP058529.1 | Halobaculum halophilum |
| 14 | 2830022 | 2830198 | - | NZ_CP065856.1 | Halosimplex litoreum |
| 15 | 63909 | 64085 | - | NZ_CP058910.1 | Halosimplex rubrum |
| 16 | 220947 | 221096 | - | NC_012029.1 | Halorubrum lacusprofundi ATCC 49239 |
| 17 | 70785 | 70961 | - | NZ_CP058909.1 | Halosimplex pelagicum |
| 18 | 1876142 | 1876324 | - | NZ_AP017558.1 | Halopenitus persicus |
| 19 | 2510813 | 2510983 | + | NZ_CP058335.1 | Natronomonas salina |
| 20 | 3839143 | 3839325 | - | NZ_CP058579.1 | Halobaculum salinum |
| 21 | 2004961 | 2005146 | - | NC_019974.1 | Natronococcus occultus SP4 |
| 22 | 307589 | 307771 | - | NC_019964.1 | Halovivax ruber XH-70 |
| 23 | 1165479 | 1165664 | + | NC_019792.1 | Natronobacterium gregoryi SP2 |
| 24 | 1066033 | 1066218 | - | NZ_CP025066.1 | Halalkaliarchaeum desulfuricum |
| 25 | 2618905 | 2619084 | - | NZ_CP019154.1 | Haloarcula taiwanensis |
| 26 | 2641180 | 2641359 | - | NC_015948.1 | Haloarcula hispanica ATCC 33960 |
| 27 | 3027574 | 3027753 | + | NZ_CP073366.1 | Haloarcula sinaiiensis ATCC 33800 |
| 28 | 2020109 | 2020288 | - | NC_006396.1 | Haloarcula marismortui ATCC 43049 |
| 29 | 232388 | 232537 | - | NZ_CP034940.1 | Halorubrum ezzemoulense |
| 30 | 1307169 | 1307354 | + | NC_015666.1 | Halopiger xanaduensis SH-6 |
| 31 | 1803524 | 1803709 | + | NZ_CP040637.1 | Natrinema pallidum |
| 32 | 1431779 | 1431964 | + | NC_013922.1 | Natrialba magadii ATCC 43099 |
| 33 | 1595835 | 1596017 | + | NC_021921.1 | Halorhabdus tiamatea SARL4B |
| 34 | 2166833 | 2167015 | + | NZ_CP007055.1 | Halostagnicola larsenii XH-48 |
| 35 | 3360990 | 3361175 | - | NC_013743.1 | Haloterrigena turkmenica DSM 5511 |
| 36 | 530340 | 530519 | - | NC_013202.1 | Halomicrobium mukohataei DSM 12286 |
| 37 | 2123049 | 2123234 | + | NZ_CP019893.1 | Natrarchaeobaculum aegyptiacum |
| 38 | 2647556 | 2647738 | + | NC_014729.1 | Halogeometricum borinquense DSM 11551 |
| 39 | 1320953 | 1321138 | + | NZ_CP071463.1 | Haloterrigena longa |
| 40 | 406585 | 406770 | - | NZ_CP024047.1 | Natrarchaeobaculum sulfurireducens |
| 41 | 1414884 | 1415069 | - | NC_013158.1 | Halorhabdus utahensis DSM 12940 |
| 42 | 392388 | 392573 | + | NC_019962.1 | Natrinema pellirubrum DSM 15624 |
| 43 | 770554 | 770703 | + | NC_020388.1 | Natronomonas moolapensis 8.8.11 |
| 44 | 2478030 | 2478215 | + | NZ_CP069188.1 | Haloterrigena salifodinae |
| 45 | 67103 | 67288 | - | NZ_CP019327.1 | Haloterrigena daqingensis |
| 46 | 763708 | 763893 | - | NZ_CP031305.1 | Natronorubrum bangense |
| 47 | 1431971 | 1432156 | - | NZ_CP019285.1 | Halobiforma lacisalsi AJ5 |
| 48 | 1847667 | 1847852 | - | NZ_CP045488.1 | Natronorubrum aibiense |
| 49 | 461925 | 462092 | + | NC_007426.1 | Natronomonas pharaonis DSM 2160 |
| 50 | 1614886 | 1615056 | - | NZ_CP016804.1 | Halodesulfurarchaeum formicicum |
| 51 | 136549 | 136725 | + | NZ_LN831302.1 | Halobacterium hubeiense |
| 52 | 1566806 | 1566976 | + | NZ_CP058334.1 | Natronomonas halophila |
| 53 | 155661 | 155834 | + | NZ_CP038631.1 | Halobacterium salinarum |
| 54 | 371463 | 371633 | - | NZ_CP011564.1 | Halanaeroarchaeum sulfurireducens |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_013967.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13245.8 | 0.89 | 48 | 349.5 | same-strand | AAA domain |
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