Result : YjiS
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | YjiS |
| NCBI Accession ID | NC_016810.1 |
| Organism | Salmonella enterica |
| Left | 4796616 |
| Right | 4796780 |
| Strand | + |
| Nucleotide Sequence | ATGGAATTTTACGAGAACCGCCCCAGACAACCATTCATTGGCTTTGTGCAGCTCAGACGGGCGCTAAAAAGGTGGTGGCTGCGTAAGCGGGCCTGTCAGGCGCTGCGACGAATGAGTGACGAGCAGTTAAGGGATATCGGGTTGGAAAGGAAGGATGTGGAATAG |
| Sequence | MEFYENRPRQPFIGFVQLRRALKRWWLRKRACQALRRMSDEQLRDIGLERKDVE |
| Source of smORF | Literature-mining |
| Function | Mutation leads to a hypervirulent phenotype. This protein is expressed in intracellular conditions. Possible novel factor which can possibly repress virulence. |
| Pubmed ID | Venturini et al 2020 |
| Domain | CDD:420128 |
| Functional Category | Others |
| Uniprot ID | P39390 |
| ORF Length (Amino Acid) | 54 |
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| Conservation Analysis |
No. of Species: 43
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 4776051 | 4776215 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 4859935 | 4860099 | - | NZ_CP054254.1 | Klebsiella variicola |
| 3 | 5323809 | 5323973 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 4 | 5223831 | 5223995 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 5 | 4568224 | 4568388 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 6 | 4929777 | 4929941 | - | NZ_CP050508.1 | Raoultella terrigena |
| 7 | 3214419 | 3214583 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 8 | 3440005 | 3440169 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 9 | 2529394 | 2529558 | + | NZ_CP053416.1 | Salmonella bongori |
| 10 | 4540592 | 4540756 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 11 | 648298 | 648462 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 12 | 2411333 | 2411497 | + | NZ_CP026047.1 | Raoultella planticola |
| 13 | 4581018 | 4581182 | - | NZ_CP041247.1 | Raoultella electrica |
| 14 | 4826697 | 4826861 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 15 | 4026336 | 4026500 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 16 | 903532 | 903705 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 17 | 2734223 | 2734387 | - | NZ_CP038469.1 | Citrobacter tructae |
| 18 | 1677642 | 1677806 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 19 | 2833085 | 2833249 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 20 | 607017 | 607181 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 21 | 3378693 | 3378857 | + | NZ_CP033744.1 | Citrobacter freundii |
| 22 | 3957966 | 3958133 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 23 | 3669294 | 3669458 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 24 | 2193103 | 2193267 | - | NZ_CP057657.1 | Escherichia fergusonii |
| 25 | 418634 | 418798 | - | NZ_LT556085.1 | Citrobacter amalonaticus |
| 26 | 574258 | 574419 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 27 | 4571751 | 4571915 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 28 | 4229752 | 4229913 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 29 | 3722678 | 3722839 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 30 | 587819 | 587980 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 31 | 607996 | 608160 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 32 | 541967 | 542128 | + | NC_015968.1 | Enterobacter soli |
| 33 | 1311655 | 1311819 | + | NZ_CP045205.1 | Citrobacter telavivensis |
| 34 | 3572513 | 3572677 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 35 | 5435018 | 5435182 | + | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 36 | 4032965 | 4033126 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 37 | 620645 | 620809 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 38 | 1943425 | 1943586 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 39 | 618655 | 618816 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 40 | 5223162 | 5223329 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 41 | 653470 | 653631 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 42 | 2420410 | 2420571 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 43 | 4028967 | 4029131 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 44 | 77365 | 77529 | - | NZ_CP020388.1 | Pluralibacter gergoviae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP054254.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00155.23 | 0.95 | 41 | 177 | opposite-strand | Aminotransferase class I and II |
| 2 | PF00392.23 | 0.95 | 41 | 177.0 | opposite-strand | Bacterial regulatory proteins, gntR family |
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