Result : B0S150
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | 50S ribosomal protein L28 |
| NCBI Accession ID | AP008971.1 |
| Organism | Finegoldia magna (strain ATCC 29328 / DSM 20472 / WAL 2508) (Peptostreptococcus magnus) |
| Left | 735508 |
| Right | 735723 |
| Strand | - |
| Nucleotide Sequence | ATGTCCAAAAAATGTGAAATTTGTGGTAAATCAAGAACTTTCGGAAATAATAGATCATTTTCTTTAAGATCTTCAAATAGAAGCTGGGCACCTAACATCAGAAAAGTTAGAGCTTTAGTTGATGGCAAACCAAAAAGAATCAATGTGTGCACAAGATGCTTAAGATCAGGTTTAGTTGAAAGACCTCAATTTATCAAAACAACAGAAGAAGAATAA |
| Sequence | MSKKCEICGKSRTFGNNRSFSLRSSNRSWAPNIRKVRALVDGKPKRINVCTRCLRSGLVERPQFIKTTEEE |
| Source of smORF | Swiss-Prot |
| Function | The ORF matches to the profile of cl00367. Profile Description: Ribosomal L28 family. This model describes bacterial and chloroplast forms of the 50S ribosomal protein L28, a polypeptide about 60 amino acids in length. Mitochondrial homologs differ substantially in architecture (e.g. SP|P36525 from Saccharomyces cerevisiae, which is 258 amino acids long) and are not included. [Protein synthesis, Ribosomal proteins: synthesis and modification] |
| Pubmed ID | 18263572 |
| Domain | CDD:412338 |
| Functional Category | Ribosomal_protein |
| Uniprot ID | B0S150 |
| ORF Length (Amino Acid) | 71 |
++ More..
| Conservation Analysis |
No. of Species: 379
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 956770 | 956976 | - | NZ_CP009761.1 | Parvimonas micra |
| 2 | 609658 | 609849 | - | NZ_LR134524.1 | Peptoniphilus harei |
| 3 | 1161627 | 1161818 | - | NZ_CP035130.1 | Gudongella oleilytica |
| 4 | 1140220 | 1140411 | + | NZ_CP068564.1 | Keratinibaculum paraultunense |
| 5 | 1170899 | 1171090 | - | NZ_CP032416.1 | Clostridium fermenticellae |
| 6 | 1829294 | 1829485 | + | NZ_CP014170.1 | Clostridium tyrobutyricum |
| 7 | 1163415 | 1163606 | - | NZ_CP020953.1 | Clostridium drakei |
| 8 | 124579 | 124770 | - | NZ_CP011803.1 | Clostridium carboxidivorans P7 |
| 9 | 3104614 | 3104805 | + | NZ_CP009933.1 | Clostridium scatologenes |
| 10 | 2157324 | 2157515 | + | NZ_CP009687.1 | Clostridium aceticum |
| 11 | 3602986 | 3603177 | - | NZ_CP012395.1 | Clostridium autoethanogenum DSM 10061 |
| 12 | 1366930 | 1367121 | - | NC_014328.1 | Clostridium ljungdahlii DSM 13528 |
| 13 | 2406914 | 2407105 | + | NZ_CP020559.1 | Clostridium formicaceticum |
| 14 | 2841552 | 2841743 | + | NZ_CP011663.1 | Clostridium sporogenes |
| 15 | 1418352 | 1418543 | - | NC_011837.1 | Clostridium kluyveri NBRC 12016 |
| 16 | 1882902 | 1883093 | - | NC_015687.1 | Clostridium acetobutylicum DSM 1731 |
| 17 | 1749508 | 1749699 | + | NC_018664.1 | Gottschalkia acidurici 9a |
| 18 | 2267740 | 2267931 | - | NC_014393.1 | Clostridium cellulovorans 743B |
| 19 | 2582972 | 2583163 | + | NZ_CP028842.1 | Clostridium botulinum |
| 20 | 1032253 | 1032444 | - | NZ_LT906477.1 | Clostridium cochlearium |
| 21 | 759375 | 759566 | - | NZ_LR134523.1 | Peptoniphilus ivorii |
| 22 | 1710325 | 1710516 | + | NZ_CP014204.2 | Clostridium baratii |
| 23 | 1822124 | 1822315 | - | NZ_CP040924.1 | Clostridium thermarum |
| 24 | 1970757 | 1970948 | + | NC_014614.1 | Acetoanaerobium sticklandii |
| 25 | 1623639 | 1623827 | + | NZ_CP040676.1 | Exiguobacterium mexicanum |
| 26 | 2101599 | 2101790 | + | NZ_HG917868.1 | Clostridium bornimense |
| 27 | 1509075 | 1509266 | + | NZ_LR590481.1 | Hathewaya histolytica |
| 28 | 1551410 | 1551601 | - | NC_022571.1 | Clostridium saccharobutylicum DSM 13864 |
| 29 | 1371848 | 1372039 | - | NZ_CP043998.1 | Clostridium diolis |
| 30 | 1458019 | 1458210 | + | NZ_CP007452.1 | Peptoclostridium acidaminophilum DSM 3953 |
| 31 | 1424631 | 1424822 | - | NC_020291.1 | Clostridium saccharoperbutylacetonicum N1-4(HMT) |
| 32 | 2928183 | 2928374 | + | NZ_CP015756.1 | Clostridium estertheticum subsp. estertheticum |
| 33 | 1426150 | 1426341 | + | NC_008593.1 | Clostridium novyi NT |
| 34 | 1030295 | 1030486 | - | NC_015520.1 | Mahella australiensis 50-1 BON |
| 35 | 1136985 | 1137176 | - | NZ_CP030775.1 | Clostridium butyricum |
| 36 | 959077 | 959268 | + | NZ_CP029462.1 | Megasphaera stantonii |
| 37 | 330526 | 330717 | + | NZ_CP017269.1 | Geosporobacter ferrireducens |
| 38 | 2226820 | 2227011 | + | NC_008261.1 | Clostridium perfringens ATCC 13124 |
| 39 | 1202626 | 1202814 | - | NZ_CP019870.1 | Clostridioides difficile |
| 40 | 928466 | 928654 | - | NC_014220.1 | Syntrophothermus lipocalidus DSM 12680 |
| 41 | 862714 | 862902 | - | NC_008346.1 | Syntrophomonas wolfei subsp. wolfei str. Goettingen G311 |
| 42 | 2789232 | 2789423 | + | NC_009633.1 | Alkaliphilus metalliredigens QYMF |
| 43 | 700303 | 700491 | + | NC_016630.1 | Filifactor alocis ATCC 35896 |
| 44 | 3083832 | 3084020 | + | NC_014624.2 | Eubacterium callanderi |
| 45 | 1254940 | 1255131 | - | NZ_CP027286.1 | Clostridium chauvoei |
| 46 | 209876 | 210067 | + | NZ_CP023671.1 | Clostridium septicum |
| 47 | 2234796 | 2234987 | + | NZ_CP013019.1 | Clostridium pasteurianum |
| 48 | 1546786 | 1546977 | - | NC_009922.1 | Alkaliphilus oremlandii OhILAs |
| 49 | 2729767 | 2729955 | + | NZ_CP061336.1 | Ruminiclostridium herbifermentans |
| 50 | 1188587 | 1188778 | + | NZ_CP016786.1 | Clostridium isatidis |
| 51 | 3141693 | 3141878 | - | NC_014833.1 | Ruminococcus albus 7 = DSM 20455 |
| 52 | 517988 | 518176 | + | NZ_CP017705.1 | Brevibacillus laterosporus DSM 25 |
| 53 | 1355825 | 1356013 | + | NZ_CP029487.1 | Eubacterium maltosivorans |
| 54 | 114294 | 114485 | + | NZ_CP009240.1 | Megasphaera elsdenii 14-14 |
| 55 | 1511733 | 1511924 | + | NZ_CP047602.1 | Thermoanaerobacterium aotearoense |
| 56 | 2859120 | 2859311 | + | NC_021184.1 | Desulfoscipio gibsoniae DSM 7213 |
| 57 | 1187869 | 1188060 | - | NC_013216.1 | Desulfofarcimen acetoxidans DSM 771 |
| 58 | 1617456 | 1617647 | - | NZ_AP019004.1 | Phascolarctobacterium faecium |
| 59 | 3118925 | 3119116 | + | NZ_CP014176.1 | Clostridium argentinense |
| 60 | 2162608 | 2162796 | - | NZ_CP019962.1 | Eubacterium limosum |
| 61 | 3705483 | 3705674 | + | NZ_CP071376.1 | Clostridium gasigenes |
| 62 | 1178234 | 1178425 | - | NZ_CP017253.2 | Clostridium taeniosporum |
| 63 | 591229 | 591420 | + | NZ_CP011232.1 | Kosmotoga pacifica |
| 64 | 539074 | 539265 | - | NC_013740.1 | Acidaminococcus fermentans DSM 20731 |
| 65 | 457448 | 457639 | + | NC_017934.1 | Mesotoga prima MesG1.Ag.4.2 |
| 66 | 313436 | 313624 | - | NZ_CP014159.1 | Aerococcus christensenii |
| 67 | 1434477 | 1434668 | + | NC_015555.1 | Thermoanaerobacterium xylanolyticum LX-11 |
| 68 | 1672895 | 1673083 | - | NZ_CP029797.1 | Paraliobacillus zengyii |
| 69 | 1833955 | 1834143 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 70 | 1562995 | 1563183 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 71 | 1659695 | 1659883 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 72 | 1622135 | 1622323 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 73 | 1628466 | 1628654 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 74 | 330337 | 330525 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 75 | 1655599 | 1655787 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 76 | 985089 | 985274 | + | NZ_CP029476.1 | Lactobacillus apis |
| 77 | 3492488 | 3492676 | - | NZ_CP034413.2 | Dysosmobacter welbionis |
| 78 | 141633 | 141821 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 79 | 1557645 | 1557833 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 80 | 3761348 | 3761536 | + | NZ_CP043404.1 | Bacillus safensis |
| 81 | 867304 | 867495 | + | NZ_CP029256.1 | Christensenella minuta |
| 82 | 1139596 | 1139781 | + | NZ_CP029544.1 | Lactobacillus helsingborgensis |
| 83 | 1327923 | 1328108 | - | NZ_HF545616.1 | Ruminococcus bicirculans |
| 84 | 2360089 | 2360277 | + | NC_013791.2 | Alkalihalobacillus pseudofirmus OF4 |
| 85 | 1983993 | 1984184 | + | NC_013385.1 | Ammonifex degensii KC4 |
| 86 | 1973427 | 1973612 | + | NZ_CP034279.1 | Streptomyces ficellus |
| 87 | 3413688 | 3413876 | + | NZ_CP017703.1 | Aeribacillus pallidus |
| 88 | 1505243 | 1505434 | - | NC_006177.1 | Symbiobacterium thermophilum IAM 14863 |
| 89 | 1930895 | 1931080 | - | NZ_CP016279.1 | Streptomyces griseochromogenes |
| 90 | 911420 | 911611 | - | NC_015437.1 | Selenomonas sputigena ATCC 35185 |
| 91 | 1737405 | 1737593 | - | NC_015589.1 | Desulfotomaculum ruminis DSM 2154 |
| 92 | 2273719 | 2273910 | - | NZ_CP059066.1 | Koleobacter methoxysyntrophicus |
| 93 | 2218127 | 2218312 | + | NZ_CP023692.1 | Streptomyces vinaceus |
| 94 | 1355991 | 1356179 | - | NZ_CP030777.1 | Faecalibacterium prausnitzii |
| 95 | 1222923 | 1223108 | + | NZ_CP029477.1 | Lactobacillus kullabergensis |
| 96 | 5095063 | 5095248 | - | NZ_CP041146.1 | Nocardioides humi |
| 97 | 2152161 | 2152352 | - | NC_010337.2 | Heliomicrobium modesticaldum Ice1 |
| 98 | 1381880 | 1382068 | - | NZ_CP067016.1 | Anaerococcus obesiensis |
| 99 | 766955 | 767143 | - | NZ_CP066014.1 | Anaerococcus vaginalis |
| 100 | 1853467 | 1853658 | - | NZ_LR134363.1 | Actinomyces slackii |
| 101 | 2395231 | 2395416 | + | NZ_CP011502.1 | Aeromicrobium erythreum |
| 102 | 960818 | 961003 | + | NZ_LT593929.1 | Propionibacterium freudenreichii |
| 103 | 3806698 | 3806883 | - | NZ_CP038267.1 | Nocardioides euryhalodurans |
| 104 | 2122408 | 2122599 | - | NZ_LT996885.1 | Dialister massiliensis |
| 105 | 1512076 | 1512264 | + | NC_014410.1 | Thermoanaerobacterium thermosaccharolyticum DSM 571 |
| 106 | 1610321 | 1610509 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 107 | 1919692 | 1919883 | - | NZ_CP045875.1 | Heliorestis convoluta |
| 108 | 2530059 | 2530250 | + | NC_015388.1 | Desulfobacca acetoxidans DSM 11109 |
| 109 | 1855573 | 1855758 | - | NZ_LT985188.1 | Micropruina glycogenica |
| 110 | 2296892 | 2297083 | + | NZ_CP009788.1 | Geobacter pickeringii |
| 111 | 1396902 | 1397087 | - | NZ_CP030862.1 | Streptomyces globosus |
| 112 | 2582491 | 2582676 | - | NZ_LR134442.1 | Propionibacterium australiense |
| 113 | 1343580 | 1343771 | + | NZ_CP017812.1 | Boudabousia tangfeifanii |
| 114 | 513114 | 513299 | - | NZ_CP033719.1 | Propionibacterium acidifaciens |
| 115 | 2591416 | 2591604 | + | NZ_CP065425.1 | Heyndrickxia vini |
| 116 | 1578732 | 1578920 | + | NC_018704.1 | Amphibacillus xylanus NBRC 15112 |
| 117 | 2236238 | 2236426 | + | NC_011898.1 | Ruminiclostridium cellulolyticum H10 |
| 118 | 1874660 | 1874848 | + | NC_010556.1 | Exiguobacterium sibiricum 255-15 |
| 119 | 860977 | 861162 | - | NZ_CP059829.1 | Lactobacillus ultunensis |
| 120 | 163612 | 163800 | - | NZ_CP017267.1 | Vagococcus teuberi |
| 121 | 2037792 | 2037980 | - | NZ_CP042593.1 | Bacillus dafuensis |
| 122 | 2586038 | 2586226 | + | NZ_CP018866.1 | Sutcliffiella cohnii |
| 123 | 702846 | 703037 | + | NZ_LT635457.1 | Actinomyces pacaensis |
| 124 | 2350636 | 2350824 | + | NZ_CP011937.1 | Bacillus velezensis |
| 125 | 1964666 | 1964854 | - | NC_016048.1 | Oscillibacter valericigenes Sjm18-20 |
| 126 | 986741 | 986929 | - | NZ_LR778174.1 | Veillonella parvula |
| 127 | 2126273 | 2126464 | + | NZ_CP036259.1 | Sporomusa termitida |
| 128 | 1394893 | 1395078 | + | NZ_LR134406.1 | Arachnia propionica |
| 129 | 1914227 | 1914418 | - | NZ_LR134476.1 | Trueperella bialowiezensis |
| 130 | 2960011 | 2960202 | + | NZ_CP022657.1 | Tumebacillus algifaecis |
| 131 | 892712 | 892900 | - | NZ_AP022321.1 | Veillonella nakazawae |
| 132 | 2466148 | 2466336 | - | NZ_CP034465.1 | Jeotgalibaca ciconiae |
| 133 | 5710884 | 5711069 | - | NZ_CP023695.1 | Streptomyces alboniger |
| 134 | 6643681 | 6643866 | - | NZ_CP022685.1 | Streptomyces formicae |
| 135 | 6740455 | 6740640 | - | NZ_CP023690.1 | Streptomyces spectabilis |
| 136 | 3061509 | 3061694 | + | NZ_CP023699.1 | Streptomyces kanamyceticus |
| 137 | 2677053 | 2677244 | + | NZ_CP066049.1 | Actinomyces naeslundii |
| 138 | 431794 | 431985 | - | NZ_LR134477.1 | Actinomyces viscosus |
| 139 | 1652102 | 1652290 | - | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 140 | 1022904 | 1023089 | - | NZ_CP012152.1 | Anoxybacillus gonensis |
| 141 | 865239 | 865427 | + | NZ_CP049887.1 | Vagococcus hydrophili |
| 142 | 3046959 | 3047150 | + | NZ_CP042430.1 | Baekduia soli |
| 143 | 1162998 | 1163186 | + | NZ_LT906470.1 | Veillonella rodentium |
| 144 | 898694 | 898882 | - | NZ_LR134375.1 | Veillonella dispar |
| 145 | 1438265 | 1438453 | + | NZ_CP039712.1 | Vagococcus zengguangii |
| 146 | 5855801 | 5855986 | - | NZ_CP013738.1 | Streptomyces globisporus C-1027 |
| 147 | 1789531 | 1789722 | - | NC_012785.1 | Kosmotoga olearia TBF 19.5.1 |
| 148 | 1406292 | 1406480 | - | NZ_AP021853.1 | Sporolactobacillus terrae |
| 149 | 1641061 | 1641249 | - | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 150 | 599909 | 600094 | - | NZ_CP064060.1 | Anoxybacillus caldiproteolyticus |
| 151 | 751718 | 751909 | + | NZ_CP007519.1 | Trueperella pyogenes |
| 152 | 2947284 | 2947475 | + | NZ_CP014228.1 | Actinomyces radicidentis |
| 153 | 3732350 | 3732535 | + | NZ_CP009896.1 | Pimelobacter simplex |
| 154 | 2421690 | 2421878 | + | NZ_CP048436.1 | Flavonifractor plautii |
| 155 | 2588828 | 2589013 | + | NZ_CP032698.1 | Streptomyces hundungensis |
| 156 | 3578334 | 3578519 | + | NZ_CP022295.1 | Nocardioides aromaticivorans |
| 157 | 951721 | 951909 | - | NZ_CP036523.1 | Peptacetobacter hiranonis |
| 158 | 1201324 | 1201509 | - | NC_006510.1 | Geobacillus kaustophilus HTA426 |
| 159 | 287203 | 287388 | - | NZ_CP061470.1 | Geobacillus zalihae |
| 160 | 2781397 | 2781582 | + | NZ_CP018058.1 | Geobacillus thermocatenulatus |
| 161 | 649173 | 649358 | - | NZ_CP061472.1 | Geobacillus thermoleovorans |
| 162 | 2380189 | 2380377 | - | NZ_CP023643.1 | Brochothrix thermosphacta |
| 163 | 2285840 | 2286028 | + | NC_009253.1 | Desulfotomaculum reducens MI-1 |
| 164 | 4069275 | 4069466 | - | NZ_AP018449.1 | Methylomusa anaerophila |
| 165 | 1298202 | 1298393 | - | NC_013521.1 | Sanguibacter keddieii DSM 10542 |
| 166 | 2139406 | 2139594 | - | NZ_CP053989.1 | Niallia circulans |
| 167 | 1048249 | 1048440 | - | NZ_CP025227.1 | Actinomyces wuliandei |
| 168 | 1495687 | 1495872 | + | NC_020990.1 | Streptomyces albidoflavus |
| 169 | 1874723 | 1874908 | + | NZ_CP031742.1 | Streptomyces koyangensis |
| 170 | 1292898 | 1293083 | + | NC_021181.2 | Lactobacillus acidophilus La-14 |
| 171 | 1238218 | 1238409 | + | NZ_CP070228.1 | Arcanobacterium phocisimile |
| 172 | 2325919 | 2326110 | + | NZ_CP007032.1 | Desulfitobacterium metallireducens DSM 15288 |
| 173 | 485557 | 485745 | + | NZ_CP014161.1 | Aerococcus urinae |
| 174 | 2382681 | 2382872 | - | NC_011979.1 | Geobacter daltonii FRC-32 |
| 175 | 1413997 | 1414182 | - | NZ_CP015438.1 | Anoxybacillus amylolyticus |
| 176 | 2323940 | 2324131 | - | NZ_LS974202.1 | Mesotoga infera |
| 177 | 1496860 | 1497048 | + | NC_015519.1 | Tepidanaerobacter acetatoxydans Re1 |
| 178 | 2748885 | 2749073 | + | NC_014829.1 | Evansella cellulosilytica DSM 2522 |
| 179 | 4202787 | 4202975 | - | NZ_CP030926.1 | Peribacillus butanolivorans |
| 180 | 977740 | 977928 | + | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 181 | 2112411 | 2112599 | + | NZ_CP017962.1 | Virgibacillus halodenitrificans |
| 182 | 1257182 | 1257367 | + | NZ_CP045007.1 | Latilactobacillus graminis |
| 183 | 1547790 | 1547981 | + | NZ_CP053642.1 | Actinomyces marmotae |
| 184 | 3406436 | 3406627 | - | NZ_CP021434.1 | Tumebacillus avium |
| 185 | 1680821 | 1681009 | - | NZ_AP017312.1 | Aneurinibacillus soli |
| 186 | 661590 | 661781 | + | NZ_CP008802.1 | Actinotignum schaalii |
| 187 | 4982143 | 4982331 | + | NZ_CP041305.1 | Cytobacillus ciccensis |
| 188 | 2687940 | 2688128 | + | NZ_LS483476.1 | Lederbergia lentus |
| 189 | 987576 | 987767 | - | NZ_LS483427.1 | Arcanobacterium haemolyticum |
| 190 | 958741 | 958914 | + | NZ_CP066065.1 | Schaalia meyeri |
| 191 | 3011895 | 3012083 | - | NZ_CP015108.1 | Sporosarcina ureae |
| 192 | 3381901 | 3382089 | - | NZ_CP063356.1 | Anaerobacillus isosaccharinicus |
| 193 | 1735618 | 1735803 | - | NC_015635.1 | Microlunatus phosphovorus NM-1 |
| 194 | 607736 | 607921 | - | NZ_CP045562.1 | Fructilactobacillus fructivorans |
| 195 | 2591419 | 2591607 | + | NC_014830.1 | Intrasporangium calvum DSM 43043 |
| 196 | 6894698 | 6894889 | + | NZ_CP015136.1 | Luteitalea pratensis |
| 197 | 1076181 | 1076366 | + | NZ_CP015444.1 | Lactobacillus helveticus |
| 198 | 3249090 | 3249281 | + | NZ_CP041694.1 | Cellulosimicrobium cellulans |
| 199 | 109211 | 109402 | - | NZ_LR134350.1 | Actinomyces howellii |
| 200 | 1786654 | 1786839 | - | NZ_CP016622.1 | Parageobacillus thermoglucosidasius |
| 201 | 5388546 | 5388731 | - | NZ_CP072827.1 | Streptomyces mobaraensis NBRC 13819 = DSM 40847 |
| 202 | 4721898 | 4722083 | - | NZ_CP029254.1 | Streptomyces spongiicola |
| 203 | 5448150 | 5448335 | - | NZ_CP023693.1 | Streptomyces cinereoruber |
| 204 | 2705666 | 2705851 | + | NZ_CP011340.1 | Streptomyces pristinaespiralis |
| 205 | 6269978 | 6270163 | - | NZ_CP059991.1 | Streptomyces gardneri |
| 206 | 8816657 | 8816842 | + | NC_013595.1 | Streptosporangium roseum DSM 43021 |
| 207 | 2973280 | 2973468 | - | NZ_CP034248.1 | Paenibacillus lentus |
| 208 | 352843 | 353031 | + | NZ_LT906446.1 | Megamonas hypermegale |
| 209 | 2619230 | 2619418 | + | NC_002570.2 | Alkalihalobacillus halodurans C-125 |
| 210 | 1510522 | 1510713 | - | NC_007498.2 | Syntrophotalea carbinolica DSM 2380 |
| 211 | 2631537 | 2631728 | + | NC_007517.1 | Geobacter metallireducens GS-15 |
| 212 | 1311653 | 1311841 | + | NC_007503.1 | Carboxydothermus hydrogenoformans Z-2901 |
| 213 | 2806838 | 2807023 | + | NZ_CP070511.1 | Parageobacillus toebii |
| 214 | 5917357 | 5917542 | - | NZ_CP020700.1 | Streptomyces tsukubensis |
| 215 | 1691783 | 1691971 | + | NZ_CP025286.1 | Ethanoligenens harbinense YUAN-3 |
| 216 | 2449918 | 2450109 | + | NC_002939.5 | Geobacter sulfurreducens PCA |
| 217 | 3729871 | 3730062 | + | NC_009483.1 | Geobacter uraniireducens Rf4 |
| 218 | 224916 | 225101 | - | NZ_CP026116.1 | Latilactobacillus curvatus JCM 1096 = DSM 20019 |
| 219 | 1492141 | 1492326 | - | NZ_CP046037.1 | Latilactobacillus sakei |
| 220 | 35123 | 35308 | - | NZ_LR130778.1 | Petrocella atlantisensis |
| 221 | 4957562 | 4957747 | - | NZ_CP023696.1 | Streptomyces fradiae ATCC 10745 = DSM 40063 |
| 222 | 3769975 | 3770163 | + | NZ_CP010820.1 | Lysinibacillus fusiformis |
| 223 | 1806783 | 1806971 | + | NZ_CP038012.1 | Sporosarcina pasteurii |
| 224 | 2558160 | 2558348 | + | NZ_CP017560.1 | Sporosarcina ureilytica |
| 225 | 2631571 | 2631762 | + | NZ_CP045529.1 | Luteimicrobium xylanilyticum |
| 226 | 4855305 | 4855493 | + | NZ_CP026520.1 | Paenibacillus chitinolyticus |
| 227 | 373113 | 373301 | - | NZ_CP060720.1 | Vagococcus carniphilus |
| 228 | 1017573 | 1017761 | - | NC_014377.1 | Thermosediminibacter oceani DSM 16646 |
| 229 | 1847036 | 1847227 | - | NZ_CP010802.1 | Desulfuromonas soudanensis |
| 230 | 1280559 | 1280744 | + | NZ_CP068053.1 | Peribacillus psychrosaccharolyticus |
| 231 | 5531952 | 5532137 | - | NZ_CP029196.1 | Streptomyces venezuelae |
| 232 | 4771426 | 4771611 | - | NZ_CP017316.1 | Streptomyces rubrolavendulae |
| 233 | 656906 | 657091 | - | NZ_CP044496.1 | Lactobacillus acetotolerans |
| 234 | 1735249 | 1735437 | - | NC_022524.1 | Bacillus infantis NRRL B-14911 |
| 235 | 1093601 | 1093786 | - | NZ_CP049257.1 | Nocardioides anomalus |
| 236 | 2146907 | 2147095 | + | NZ_CP019698.1 | Desulfotomaculum ferrireducens |
| 237 | 666355 | 666540 | + | NZ_CP012034.1 | Companilactobacillus ginsenosidimutans |
| 238 | 6480424 | 6480609 | - | NZ_CP027306.1 | Streptomyces atratus |
| 239 | 1060935 | 1061123 | - | NZ_CP013114.1 | Staphylococcus equorum |
| 240 | 806397 | 806582 | - | NZ_CP061341.1 | Lactobacillus kefiranofaciens |
| 241 | 1383459 | 1383650 | - | NC_013205.1 | Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446 |
| 242 | 1587682 | 1587867 | - | NZ_LR699011.1 | Roseburia hominis |
| 243 | 367025 | 367213 | - | NZ_CP015519.1 | Syntrophotalea acetylenivorans |
| 244 | 1104458 | 1104649 | - | NZ_CP039292.1 | Actinomyces procaprae |
| 245 | 1399567 | 1399755 | - | NZ_CP019699.1 | Novibacillus thermophilus |
| 246 | 2187705 | 2187881 | + | NZ_CP040635.1 | Acidipropionibacterium jensenii |
| 247 | 1989777 | 1989965 | + | NZ_CP016538.2 | Planococcus maritimus |
| 248 | 2013020 | 2013208 | + | NZ_CP059540.1 | Planococcus maritimus |
| 249 | 1785452 | 1785640 | + | NZ_CP013659.2 | Planococcus rifietoensis |
| 250 | 1519730 | 1519921 | - | NC_011661.1 | Dictyoglomus turgidum DSM 6724 |
| 251 | 1335333 | 1335524 | - | NC_011297.1 | Dictyoglomus thermophilum H-6-12 |
| 252 | 119632 | 119820 | - | NZ_CP009709.1 | Weizmannia coagulans DSM 1 = ATCC 7050 |
| 253 | 1639017 | 1639202 | + | NZ_CP065253.1 | Streptomyces clavuligerus |
| 254 | 2359858 | 2360043 | + | NZ_CP040058.1 | Anaerostipes rhamnosivorans |
| 255 | 1288816 | 1289001 | - | NZ_CP036345.1 | Anaerostipes caccae L1-92 |
| 256 | 1056793 | 1056978 | + | NZ_CP041364.1 | Schleiferilactobacillus harbinensis |
| 257 | 562407 | 562595 | - | NZ_CP019728.1 | Jeotgalibaca dankookensis |
| 258 | 2171886 | 2172071 | + | NZ_CP014342.1 | Geobacillus subterraneus |
| 259 | 1104528 | 1104713 | + | NZ_CP014872.1 | Fructilactobacillus lindneri |
| 260 | 1474432 | 1474641 | - | NZ_CP039543.1 | Desulfovibrio marinus |
| 261 | 2610135 | 2610320 | - | NZ_CP015079.1 | Nocardioides dokdonensis FR1436 |
| 262 | 4258416 | 4258604 | + | NZ_CP048209.1 | Paenibacillus lycopersici |
| 263 | 1338874 | 1339062 | + | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 264 | 1967225 | 1967413 | + | NZ_CP016539.2 | Planococcus plakortidis |
| 265 | 1984797 | 1984985 | + | NZ_CP048104.1 | Kroppenstedtia pulmonis |
| 266 | 563149 | 563325 | - | NZ_CP041091.1 | Nocardioides sambongensis |
| 267 | 3427227 | 3427418 | + | NZ_LT828648.1 | Nitrospira japonica |
| 268 | 3178094 | 3178282 | - | NZ_CP018061.1 | Enterococcus mundtii |
| 269 | 3549639 | 3549827 | - | NZ_CP011388.1 | Paenibacillus swuensis |
| 270 | 1632253 | 1632441 | + | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 271 | 939759 | 939947 | + | NZ_CP018199.1 | Staphylococcus succinus |
| 272 | 1727813 | 1728001 | + | NZ_CP008724.1 | Staphylococcus xylosus |
| 273 | 276297 | 276482 | - | NZ_CP044344.1 | Nocardioides cynanchi |
| 274 | 166392 | 166580 | + | NZ_CP022983.1 | Cytobacillus kochii |
| 275 | 1411440 | 1411637 | + | NC_015682.1 | Thermodesulfobacterium geofontis OPF15 |
| 276 | 3290355 | 3290546 | + | NC_018017.1 | Desulfitobacterium dehalogenans ATCC 51507 |
| 277 | 4078588 | 4078779 | + | NC_011830.1 | Desulfitobacterium hafniense DCB-2 |
| 278 | 1346999 | 1347187 | + | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 279 | 1325187 | 1325375 | + | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 280 | 398859 | 399047 | + | NZ_CP049889.1 | Jeotgalibaca porci |
| 281 | 5992393 | 5992578 | - | NZ_CP010407.1 | Streptomyces vietnamensis |
| 282 | 216857 | 217042 | + | NZ_CP038436.1 | Nocardioides seonyuensis |
| 283 | 2985754 | 2985942 | + | NZ_CP022121.1 | Dehalobacterium formicoaceticum |
| 284 | 1808768 | 1808959 | + | NZ_LS483423.1 | Jonesia denitrificans |
| 285 | 2128207 | 2128395 | + | NZ_CP016540.2 | Planococcus versutus |
| 286 | 2111535 | 2111720 | - | NC_014376.1 | [Clostridium] saccharolyticum WM1 |
| 287 | 1823264 | 1823449 | - | NZ_CP018906.1 | Lentilactobacillus curieae |
| 288 | 87071 | 87259 | - | NC_020207.1 | Enterococcus faecium ATCC 8459 = NRRL B-2354 |
| 289 | 90204 | 90392 | - | NZ_CP065211.1 | Enterococcus lactis |
| 290 | 1448639 | 1448827 | + | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 291 | 3829250 | 3829441 | + | NC_018068.1 | Desulfosporosinus acidiphilus SJ4 |
| 292 | 871920 | 872108 | - | NZ_CP017237.1 | Moorella thermoacetica |
| 293 | 1799021 | 1799206 | + | NC_014387.1 | Butyrivibrio proteoclasticus B316 |
| 294 | 2623607 | 2623795 | - | NZ_CP009286.1 | Paenibacillus stellifer |
| 295 | 672502 | 672690 | - | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 296 | 655272 | 655457 | - | NZ_CP045563.1 | Fructilactobacillus sanfranciscensis |
| 297 | 6455081 | 6455269 | - | NZ_CP048286.1 | Paenibacillus rhizovicinus |
| 298 | 4143878 | 4144063 | - | NZ_CP048000.1 | Anaerocolumna sedimenticola |
| 299 | 2055762 | 2055953 | - | NC_020520.1 | Ilumatobacter coccineus YM16-304 |
| 300 | 9254051 | 9254236 | + | NZ_CP045572.1 | Nonomuraea nitratireducens |
| 301 | 1552780 | 1552965 | - | NZ_AP012544.1 | Lacticaseibacillus casei DSM 20011 = JCM 1134 = ATCC 393 |
| 302 | 1556811 | 1556996 | - | NZ_LS991421.1 | Lacticaseibacillus zeae |
| 303 | 2368595 | 2368786 | + | NC_015172.1 | Syntrophobotulus glycolicus DSM 8271 |
| 304 | 3295043 | 3295231 | + | NZ_CP014616.1 | Sporosarcina psychrophila |
| 305 | 1849132 | 1849320 | + | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 306 | 1864584 | 1864772 | + | NZ_LT906444.1 | Listeria welshimeri |
| 307 | 1944901 | 1945089 | + | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 308 | 1890951 | 1891139 | + | NC_003210.1 | Listeria monocytogenes EGD-e |
| 309 | 4826656 | 4826844 | + | NZ_CP034437.1 | Paenibacillus albus |
| 310 | 1699728 | 1699913 | + | NZ_CP032364.1 | Lachnoanaerobaculum umeaense |
| 311 | 2880729 | 2880917 | - | NZ_CP009288.1 | Paenibacillus durus |
| 312 | 518100 | 518291 | + | NZ_CP027228.1 | Mogibacterium diversum |
| 313 | 1189991 | 1190179 | - | NZ_CP039710.1 | Thermoactinomyces vulgaris |
| 314 | 1381423 | 1381617 | + | NZ_CP044548.2 | Janibacter melonis |
| 315 | 4913796 | 4913987 | + | NC_016584.1 | Desulfosporosinus orientis DSM 765 |
| 316 | 2467832 | 2468020 | - | NZ_CP004078.1 | Paenibacillus sabinae T27 |
| 317 | 4369059 | 4369247 | + | NZ_AP019400.1 | Cohnella abietis |
| 318 | 4714809 | 4714994 | - | NC_016111.1 | Streptomyces cattleya NRRL 8057 = DSM 46488 |
| 319 | 4807239 | 4807424 | - | NZ_CP031264.1 | Streptacidiphilus bronchialis |
| 320 | 2258032 | 2258220 | - | NZ_CP021780.1 | Paenibacillus donghaensis |
| 321 | 4546196 | 4546381 | + | NC_016582.1 | Streptomyces bingchenggensis BCW-1 |
| 322 | 2287804 | 2287992 | + | NZ_CP014167.1 | Paenibacillus yonginensis |
| 323 | 941381 | 941569 | - | NZ_CP045293.1 | Paenibacillus guangzhouensis |
| 324 | 1191438 | 1191632 | - | NZ_LT906453.1 | Dermatophilus congolensis |
| 325 | 1008267 | 1008455 | - | NZ_CP033433.1 | Cohnella candidum |
| 326 | 4469698 | 4469886 | - | NZ_CP011058.1 | Paenibacillus beijingensis |
| 327 | 1559822 | 1560010 | + | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 328 | 978050 | 978238 | - | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 329 | 3207985 | 3208170 | + | NZ_CP059164.1 | Nocardioides ungokensis |
| 330 | 1795254 | 1795445 | + | NZ_CP048649.1 | Aminipila butyrica |
| 331 | 2615176 | 2615379 | + | NC_016629.1 | Desulfocurvibacter africanus subsp. africanus str. Walvis Bay |
| 332 | 2828002 | 2828190 | - | NZ_CP009428.1 | Paenibacillus odorifer |
| 333 | 756705 | 756896 | - | NZ_CP048877.1 | Thermosulfuriphilus ammonigenes |
| 334 | 1999406 | 1999591 | - | NC_015275.1 | Cellulosilyticum lentocellum DSM 5427 |
| 335 | 3024976 | 3025161 | - | NZ_CP022464.2 | Enterocloster bolteae |
| 336 | 1462501 | 1462689 | + | NC_003869.1 | Caldanaerobacter subterraneus subsp. tengcongensis MB4 |
| 337 | 4341626 | 4341808 | - | NZ_CP016793.1 | Lentzea guizhouensis |
| 338 | 972380 | 972565 | + | NC_012778.1 | [Eubacterium] eligens ATCC 27750 |
| 339 | 2198623 | 2198811 | + | NZ_CP048103.1 | Kroppenstedtia eburnea |
| 340 | 1336863 | 1337051 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 341 | 2657916 | 2658104 | + | NZ_CP019659.1 | Paenibacillus larvae subsp. larvae |
| 342 | 747509 | 747697 | - | NZ_CP035492.1 | Paenibacillus protaetiae |
| 343 | 2263316 | 2263504 | - | NZ_CP034346.1 | Paenibacillus lutimineralis |
| 344 | 5069795 | 5069983 | - | NZ_CP048429.1 | Paenibacillus jilunlii |
| 345 | 3140687 | 3140875 | - | NZ_CP009287.1 | Paenibacillus graminis |
| 346 | 6062226 | 6062414 | + | NZ_CP068595.1 | Paenibacillus sonchi |
| 347 | 3508164 | 3508352 | - | NZ_LN831776.1 | Paenibacillus riograndensis SBR5 |
| 348 | 3616729 | 3616917 | - | NZ_CP009285.1 | Paenibacillus borealis |
| 349 | 2220670 | 2220855 | + | NZ_CP060404.1 | Streptomyces buecherae |
| 350 | 1004330 | 1004518 | + | NZ_AP019367.1 | Parolsenella catena |
| 351 | 1316416 | 1316604 | + | NZ_CP045295.1 | Paenibacillus cellulositrophicus |
| 352 | 1130672 | 1130860 | - | NZ_AP019308.1 | Paenibacillus baekrokdamisoli |
| 353 | 1345495 | 1345716 | - | NZ_CP014334.1 | Fervidobacterium islandicum |
| 354 | 1226532 | 1226720 | + | NC_015389.1 | Coriobacterium glomerans PW2 |
| 355 | 4331697 | 4331885 | + | NZ_CP034235.1 | Paenibacillus psychroresistens |
| 356 | 2488385 | 2488579 | + | NZ_AP022563.1 | Mycolicibacterium duvalii |
| 357 | 1710385 | 1710558 | - | NZ_CP011801.1 | Nitrospira moscoviensis |
| 358 | 1012236 | 1012430 | - | NZ_LR026975.1 | Mycolicibacterium hassiacum DSM 44199 |
| 359 | 1207089 | 1207277 | - | NZ_CP013652.1 | Paenibacillus naphthalenovorans |
| 360 | 3262324 | 3262509 | + | NC_014165.1 | Thermobispora bispora DSM 43833 |
| 361 | 650245 | 650439 | - | NZ_AP018712.1 | Tepiditoga spiralis |
| 362 | 1143218 | 1143406 | - | NZ_CP016502.1 | Acetivibrio thermocellus DSM 2360 |
| 363 | 1121643 | 1121864 | + | NC_009718.1 | Fervidobacterium nodosum Rt17-B1 |
| 364 | 7589652 | 7589837 | - | NZ_CP065050.1 | Streptomyces solisilvae |
| 365 | 2669297 | 2669485 | - | NZ_CP039126.1 | Blautia producta |
| 366 | 1316013 | 1316234 | - | NC_017095.1 | Fervidobacterium pennivorans DSM 9078 |
| 367 | 242257 | 242454 | - | NZ_CP008796.1 | Thermodesulfobacterium commune DSM 2178 |
| 368 | 786207 | 786398 | - | NZ_LT821227.1 | Phoenicibacter congonensis |
| 369 | 1865621 | 1865806 | - | NZ_CP022753.1 | Nocardiopsis gilva YIM 90087 |
| 370 | 290288 | 290476 | + | NC_014216.1 | Desulfurivibrio alkaliphilus AHT 2 |
| 371 | 7932913 | 7933095 | + | NC_019673.1 | Saccharothrix espanaensis DSM 44229 |
| 372 | 3431413 | 3431604 | + | NC_013441.1 | Gordonia bronchialis DSM 43247 |
| 373 | 2539944 | 2540135 | - | NZ_CP027114.1 | Gordonia alkanivorans |
| 374 | 2698400 | 2698591 | - | NZ_CP059694.1 | Gordonia rubripertincta |
| 375 | 6883911 | 6884093 | + | NZ_CP023445.1 | Actinosynnema pretiosum |
| 376 | 7026526 | 7026708 | + | NC_013093.1 | Actinosynnema mirum DSM 43827 |
| 377 | 9572015 | 9572197 | + | NZ_CP034550.1 | Saccharothrix syringae |
| 378 | 3051050 | 3051241 | + | NZ_CP027433.1 | Gordonia iterans |
| 379 | 269708 | 269899 | + | NC_017583.1 | Spirochaeta thermophila DSM 6578 |
| 380 | 1323867 | 1324076 | - | NC_011653.1 | Thermosipho africanus TCF52B |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134524.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13684.8 | 0.74 | 280 | 599 | opposite-strand | Dihydroxyacetone kinase family |
| 2 | PF02734.19 | 0.75 | 285 | 593.0 | opposite-strand | DAK2 domain |
| 3 | PF17191.6 | 0.76 | 289 | 2391.0 | opposite-strand | RecG wedge domain |
| 4 | PF00271.33 | 0.65 | 247 | 2451.0 | opposite-strand | Helicase conserved C-terminal domain |
| 5 | PF00270.31 | 0.83 | 313 | 2359.0 | opposite-strand | DEAD/DEAH box helicase |
| 6 | PF04851.17 | 0.83 | 316 | 2356 | opposite-strand | Type III restriction enzyme, res subunit |
++ More..