Result : YmdF
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | YmdF |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica |
| Left | 1164548 |
| Right | 1164715 |
| Strand | + |
| Nucleotide Sequence | ATGGCAAACCATCGTGGCGGTTCCGGTAATTTTGCGGAAGACCGCGAAAGAGCATCAGAAGCAGGTCGTAAAGGTGGTCAGCACAGCGGGGGCAATTTTAAGAATGACCCGCAGCGTGCATCCGAAGCAGGCAAAAAAGGGGGCAAAAGCAGTAACCGTAATAGCTAG |
| Sequence | MANHRGGSGNFAEDRERASEAGRKGGQHSGGNFKNDPQRASEAGKKGGKSSNRNS |
| Source of smORF | Literature-mining |
| Function | Intrinsically disordered protein with KGG stress motif required for wild type falgellum dependent swimming and swarming motility. Mutants have high levels of PhoP mediated repression of flhDC operon. Inactivation of this gene does not make the effect more severe in the STM14_1829 mutant. |
| Pubmed ID | 30373755 |
| Domain | |
| Functional Category | Others |
| Uniprot ID | P56614 |
| ORF Length (Amino Acid) | 55 |
++ More..
| Conservation Analysis |
No. of Species: 85
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3600650 | 3600817 | + | NZ_CP053416.1 | Salmonella bongori |
| 2 | 3988929 | 3989111 | + | NZ_CP053416.1 | Salmonella bongori |
| 3 | 4336832 | 4337014 | + | NZ_CP053416.1 | Salmonella bongori |
| 4 | 1206192 | 1206359 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 5 | 1592067 | 1592249 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 6 | 1825552 | 1825734 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 7 | 1172520 | 1172693 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 8 | 1855337 | 1855519 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 9 | 1898338 | 1898511 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 10 | 3696871 | 3697044 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 11 | 2663447 | 2663620 | - | NZ_CP011602.1 | Phytobacter ursingii |
| 12 | 2275145 | 2275327 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 13 | 2273874 | 2274050 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 14 | 3893076 | 3893249 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 15 | 3514178 | 3514351 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 16 | 3515444 | 3515626 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 17 | 3646226 | 3646399 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 18 | 2682320 | 2682493 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 19 | 1068081 | 1068254 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 20 | 1729144 | 1729317 | + | NZ_LR134340.1 | Escherichia marmotae |
| 21 | 141299 | 141472 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 22 | 1079099 | 1079272 | + | NZ_AP014857.1 | Escherichia albertii |
| 23 | 3376661 | 3376834 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 24 | 4012498 | 4012680 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 25 | 3920886 | 3921071 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 26 | 2842324 | 2842500 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 27 | 3719942 | 3720115 | + | NZ_CP026047.1 | Raoultella planticola |
| 28 | 3525661 | 3525834 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 29 | 1612717 | 1612890 | - | NZ_CP038469.1 | Citrobacter tructae |
| 30 | 557289 | 557462 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 31 | 4556514 | 4556687 | + | NZ_CP033744.1 | Citrobacter freundii |
| 32 | 616992 | 617177 | + | NZ_CP033744.1 | Citrobacter freundii |
| 33 | 1684557 | 1684730 | + | NC_015968.1 | Enterobacter soli |
| 34 | 841115 | 841285 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 35 | 283401 | 283586 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 36 | 2835245 | 2835424 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 37 | 1728662 | 1728832 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 38 | 2248580 | 2248765 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 39 | 1669715 | 1669885 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 40 | 2216917 | 2217102 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 41 | 1714304 | 1714474 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 42 | 2287231 | 2287416 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 43 | 3280504 | 3280677 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 44 | 3108433 | 3108618 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 45 | 2427587 | 2427772 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 46 | 1973724 | 1973897 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 47 | 2090035 | 2090220 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 48 | 2810084 | 2810269 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 49 | 3530218 | 3530391 | - | NZ_CP054254.1 | Klebsiella variicola |
| 50 | 3346962 | 3347147 | - | NZ_CP054254.1 | Klebsiella variicola |
| 51 | 2516789 | 2516974 | + | NZ_CP054254.1 | Klebsiella variicola |
| 52 | 2936076 | 2936249 | - | NZ_LR134201.1 | Cedecea lapagei |
| 53 | 3252816 | 3252989 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 54 | 2671686 | 2671871 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 55 | 1818624 | 1818797 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 56 | 3638170 | 3638343 | - | NZ_CP050508.1 | Raoultella terrigena |
| 57 | 2429266 | 2429451 | + | NZ_CP050508.1 | Raoultella terrigena |
| 58 | 2699632 | 2699817 | + | NZ_CP050508.1 | Raoultella terrigena |
| 59 | 3819087 | 3819260 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 60 | 2606764 | 2606949 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 61 | 2868961 | 2869137 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 62 | 3341849 | 3342022 | - | NZ_CP041247.1 | Raoultella electrica |
| 63 | 1785127 | 1785300 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 64 | 1597857 | 1598030 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 65 | 3161049 | 3161222 | - | NZ_CP023525.1 | Cedecea neteri |
| 66 | 3077940 | 3078116 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 67 | 2206844 | 2207026 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 68 | 1121800 | 1121985 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 69 | 4198320 | 4198490 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 70 | 1566309 | 1566494 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 71 | 1916751 | 1916924 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 72 | 2492261 | 2492446 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 73 | 1703411 | 1703581 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 74 | 2243582 | 2243767 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 75 | 884778 | 884948 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 76 | 1464552 | 1464731 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 77 | 2534730 | 2534903 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 78 | 2381644 | 2381817 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 79 | 1609407 | 1609580 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 80 | 1783467 | 1783640 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 81 | 2420393 | 2420566 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 82 | 2219764 | 2219937 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 83 | 1658655 | 1658828 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 84 | 1812343 | 1812516 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 85 | 584093 | 584266 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 86 | 2337304 | 2337489 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 87 | 2812142 | 2812324 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 88 | 1840633 | 1840806 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 89 | 1785151 | 1785324 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 90 | 1215183 | 1215368 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 91 | 3275394 | 3275570 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 92 | 371297 | 371479 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 93 | 1302692 | 1302868 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 94 | 2044001 | 2044174 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 95 | 2747034 | 2747216 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 96 | 1763296 | 1763472 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 97 | 1018301 | 1018474 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 98 | 2515355 | 2515531 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 99 | 2921013 | 2921198 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 100 | 3629226 | 3629399 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 101 | 2072153 | 2072338 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 102 | 3434124 | 3434303 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 103 | 3357789 | 3357962 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 104 | 2379345 | 2379527 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 105 | 1198870 | 1199043 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 106 | 295087 | 295269 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 107 | 1607211 | 1607384 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 108 | 1787400 | 1787573 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 109 | 2264983 | 2265156 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 110 | 3056240 | 3056413 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 111 | 2968900 | 2969076 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 112 | 4093538 | 4093726 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 113 | 1438642 | 1438830 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 114 | 1655300 | 1655482 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 115 | 4530583 | 4530750 | + | NZ_CP049115.1 | Pantoea stewartii |
| 116 | 2082486 | 2082650 | - | NZ_CP049115.1 | Pantoea stewartii |
| 117 | 278763 | 278930 | + | NZ_CP049115.1 | Pantoea stewartii |
| 118 | 361230 | 361424 | + | NZ_CP049115.1 | Pantoea stewartii |
| 119 | 277413 | 277580 | - | NZ_CP049115.1 | Pantoea stewartii |
| 120 | 209741 | 209917 | - | NZ_CP049115.1 | Pantoea stewartii |
| 121 | 4000486 | 4000650 | - | NZ_CP028271.1 | Mixta intestinalis |
| 122 | 3287781 | 3287963 | - | NZ_CP028271.1 | Mixta intestinalis |
| 123 | 1415112 | 1415294 | - | NZ_CP028271.1 | Mixta intestinalis |
| 124 | 395025 | 395198 | - | NZ_CP028271.1 | Mixta intestinalis |
| 125 | 2633493 | 2633666 | - | NZ_CP038853.1 | Pantoea vagans |
| 126 | 720187 | 720351 | + | NZ_CP038853.1 | Pantoea vagans |
| 127 | 1945878 | 1946057 | + | NZ_CP038853.1 | Pantoea vagans |
| 128 | 1765754 | 1765942 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 129 | 3398261 | 3398428 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 130 | 871693 | 871857 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 131 | 2552529 | 2552705 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 132 | 1438095 | 1438268 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 133 | 3343446 | 3343610 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 134 | 742646 | 742810 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 135 | 2686149 | 2686322 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 136 | 2361706 | 2361873 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 137 | 2031025 | 2031207 | + | NZ_CP019706.1 | Pantoea alhagi |
| 138 | 3678448 | 3678630 | + | NZ_CP019706.1 | Pantoea alhagi |
| 139 | 441299 | 441472 | + | NZ_CP019706.1 | Pantoea alhagi |
| 140 | 1406575 | 1406739 | + | NZ_CP019706.1 | Pantoea alhagi |
| 141 | 1781769 | 1781948 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 142 | 1011465 | 1011644 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 143 | 2892003 | 2892182 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 144 | 2179147 | 2179329 | - | NZ_CP061511.1 | Mixta calida |
| 145 | 3832780 | 3832965 | - | NZ_CP061511.1 | Mixta calida |
| 146 | 1152027 | 1152200 | - | NZ_CP061511.1 | Mixta calida |
| 147 | 177579 | 177743 | - | NZ_CP061511.1 | Mixta calida |
| 148 | 2269621 | 2269803 | - | NZ_CP026377.1 | Mixta gaviniae |
| 149 | 4128227 | 4128412 | - | NZ_CP026377.1 | Mixta gaviniae |
| 150 | 242239 | 242403 | - | NZ_CP026377.1 | Mixta gaviniae |
| 151 | 1229316 | 1229489 | - | NZ_CP026377.1 | Mixta gaviniae |
| 152 | 100057 | 100233 | + | NZ_CP045722.1 | Pantoea eucalypti |
| 153 | 3537500 | 3537676 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 154 | 146485 | 146661 | + | NZ_CP038855.1 | Pantoea vagans |
| 155 | 696495 | 696671 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 156 | 2372348 | 2372506 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 157 | 3860361 | 3860531 | + | NZ_CP011835.1 | Azotobacter chroococcum |
| 158 | 2423750 | 2423926 | - | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 159 | 5134901 | 5135059 | - | NZ_CP014870.1 | Pseudomonas silesiensis |
| 160 | 114639 | 114815 | - | NZ_CP034150.1 | Pantoea agglomerans |
| 161 | 741624 | 741782 | - | NC_009937.1 | Azorhizobium caulinodans ORS 571 |
| 162 | 2978685 | 2978858 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 163 | 3246688 | 3246861 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 164 | 2745472 | 2745645 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 165 | 102018 | 102203 | - | NZ_CP003182.2 | Granulibacter bethesdensis CGDNIH4 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP053416.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00328.24 | 0.62 | 53 | 1274 | same-strand | Histidine phosphatase superfamily (branch 2) |
| 2 | PF13993.8 | 0.75 | 64 | 1006.5 | opposite-strand | YccJ-like protein |
| 3 | PF03358.17 | 0.74 | 63 | 391 | opposite-strand | NADPH-dependent FMN reductase |
| 4 | PF00258.27 | 0.74 | 63 | 391 | opposite-strand | Flavodoxin |
++ More..