Result : YciG
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | YciG |
| NCBI Accession ID | NC_016856.1 |
| Organism | Salmonella enterica |
| Left | 1836247 |
| Right | 1836429 |
| Strand | + |
| Nucleotide Sequence | ATGGCCGAACATCGTGGTGGTTCAGGAAATTTCGCCGAGAATCGTGAAAAAGCATCTGAAGCGGGCCGCAAAGGCGGTCAGCATAGCGGCGGGAATTTCAAAAACGATCCGCAACGAGCTTCTGAAGCCGGTAAAAAAGGTGGTCAGAATAGTCACGGCGGACGTAAATCCGATAATTCCTGA |
| Sequence | MAEHRGGSGNFAENREKASEAGRKGGQHSGGNFKNDPQRASEAGKKGGQNSHGGRKSDNS |
| Source of smORF | Literature-mining |
| Function | Intrinsically disordered protein with KGG stress motif required for wild type falgellum dependent swimming and swarming motility. Mutants have high levels of PhoP mediated repression of flhDC operon. Inactivation of this gene does not make the effect more severe in the STM14_1829 mutant. |
| Pubmed ID | 30373755 |
| Domain | CDD:226252 |
| Functional Category | Others |
| Uniprot ID | P56614 |
| ORF Length (Amino Acid) | 60 |
++ More..
| Conservation Analysis |
No. of Species: 92
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1825552 | 1825734 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 2 | 1592067 | 1592249 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 3 | 1206192 | 1206359 | + | NC_003197.2 | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
| 4 | 4336832 | 4337014 | + | NZ_CP053416.1 | Salmonella bongori |
| 5 | 3988929 | 3989111 | + | NZ_CP053416.1 | Salmonella bongori |
| 6 | 3600650 | 3600817 | + | NZ_CP053416.1 | Salmonella bongori |
| 7 | 616992 | 617177 | + | NZ_CP033744.1 | Citrobacter freundii |
| 8 | 4556514 | 4556687 | + | NZ_CP033744.1 | Citrobacter freundii |
| 9 | 2243582 | 2243767 | - | NZ_AP022508.1 | Enterobacter bugandensis |
| 10 | 1703411 | 1703581 | + | NZ_AP022508.1 | Enterobacter bugandensis |
| 11 | 2248580 | 2248765 | - | NZ_CP027986.1 | Enterobacter sichuanensis |
| 12 | 1728662 | 1728832 | + | NZ_CP027986.1 | Enterobacter sichuanensis |
| 13 | 2216917 | 2217102 | - | NZ_CP017184.1 | Enterobacter roggenkampii |
| 14 | 1669715 | 1669885 | + | NZ_CP017184.1 | Enterobacter roggenkampii |
| 15 | 283401 | 283586 | + | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 16 | 841115 | 841285 | - | NZ_CP025034.2 | Enterobacter sp. SGAir0187 |
| 17 | 2287231 | 2287416 | - | NZ_CP009756.1 | Enterobacter cloacae |
| 18 | 1714304 | 1714474 | + | NZ_CP009756.1 | Enterobacter cloacae |
| 19 | 2492261 | 2492446 | - | NZ_CP043318.1 | Enterobacter chengduensis |
| 20 | 1916751 | 1916924 | + | NZ_CP043318.1 | Enterobacter chengduensis |
| 21 | 3108433 | 3108618 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 22 | 2427587 | 2427772 | + | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 23 | 3280504 | 3280677 | - | NZ_CP065838.1 | Klebsiella quasipneumoniae |
| 24 | 2090035 | 2090220 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 25 | 2810084 | 2810269 | - | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 26 | 1973724 | 1973897 | + | NC_016845.1 | Klebsiella pneumoniae subsp. pneumoniae HS11286 |
| 27 | 3346962 | 3347147 | - | NZ_CP054254.1 | Klebsiella variicola |
| 28 | 2516789 | 2516974 | + | NZ_CP054254.1 | Klebsiella variicola |
| 29 | 3530218 | 3530391 | - | NZ_CP054254.1 | Klebsiella variicola |
| 30 | 1566309 | 1566494 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 31 | 4198320 | 4198490 | + | NZ_AP019007.1 | Enterobacter oligotrophicus |
| 32 | 2606764 | 2606949 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 33 | 3819087 | 3819260 | - | NZ_CP060111.1 | Klebsiella michiganensis |
| 34 | 4012498 | 4012680 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 35 | 3920886 | 3921071 | + | NZ_LT556085.1 | Citrobacter amalonaticus |
| 36 | 1855337 | 1855519 | + | NC_013716.1 | Citrobacter rodentium ICC168 |
| 37 | 2275145 | 2275327 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 38 | 2273874 | 2274050 | + | NZ_CP011602.1 | Phytobacter ursingii |
| 39 | 2072153 | 2072338 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 40 | 3629226 | 3629399 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 41 | 2921013 | 2921198 | - | NZ_CP035129.1 | Kosakonia cowanii |
| 42 | 371297 | 371479 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 43 | 2044001 | 2044174 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 44 | 1302692 | 1302868 | - | NZ_CP016337.1 | Kosakonia sacchari |
| 45 | 2747034 | 2747216 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 46 | 1018301 | 1018474 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 47 | 1763296 | 1763472 | + | NZ_CP063425.1 | Kosakonia pseudosacchari |
| 48 | 2812142 | 2812324 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 49 | 1840633 | 1840806 | + | NZ_CP015113.1 | Kosakonia radicincitans |
| 50 | 2379345 | 2379527 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 51 | 3357789 | 3357962 | - | NZ_CP014007.2 | Kosakonia oryzae |
| 52 | 295087 | 295269 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 53 | 1198870 | 1199043 | - | NZ_CP045300.1 | Kosakonia arachidis |
| 54 | 2671686 | 2671871 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 55 | 3252816 | 3252989 | - | NZ_LR134475.1 | Klebsiella aerogenes |
| 56 | 1655300 | 1655482 | - | NC_002695.2 | Escherichia coli O157:H7 str. Sakai |
| 57 | 1464552 | 1464731 | - | NZ_CP017279.1 | Enterobacter ludwigii |
| 58 | 884778 | 884948 | + | NZ_CP017279.1 | Enterobacter ludwigii |
| 59 | 2699632 | 2699817 | + | NZ_CP050508.1 | Raoultella terrigena |
| 60 | 2429266 | 2429451 | + | NZ_CP050508.1 | Raoultella terrigena |
| 61 | 3638170 | 3638343 | - | NZ_CP050508.1 | Raoultella terrigena |
| 62 | 3515444 | 3515626 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 63 | 3514178 | 3514351 | + | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 64 | 3893076 | 3893249 | - | NZ_CP051548.1 | Phytobacter diazotrophicus |
| 65 | 3646226 | 3646399 | - | NZ_CP036175.1 | Klebsiella huaxiensis |
| 66 | 1215183 | 1215368 | + | NZ_CP045769.1 | Enterobacter cancerogenus |
| 67 | 1785151 | 1785324 | - | NZ_CP045769.1 | Enterobacter cancerogenus |
| 68 | 3719942 | 3720115 | + | NZ_CP026047.1 | Raoultella planticola |
| 69 | 3525661 | 3525834 | - | NZ_CP046672.1 | Raoultella ornithinolytica |
| 70 | 557289 | 557462 | - | NZ_CP044098.1 | Citrobacter portucalensis |
| 71 | 3077940 | 3078116 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 72 | 2206844 | 2207026 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 73 | 1121800 | 1121985 | - | NZ_CP013990.1 | Leclercia adecarboxylata |
| 74 | 1818624 | 1818797 | + | NZ_CP012871.1 | [Enterobacter] lignolyticus |
| 75 | 1785127 | 1785300 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 76 | 1597857 | 1598030 | - | NZ_CP027107.1 | Cronobacter sakazakii |
| 77 | 1612717 | 1612890 | - | NZ_CP038469.1 | Citrobacter tructae |
| 78 | 3275394 | 3275570 | + | NZ_CP040428.1 | Jejubacter calystegiae |
| 79 | 3341849 | 3342022 | - | NZ_CP041247.1 | Raoultella electrica |
| 80 | 1898338 | 1898511 | - | NC_009792.1 | Citrobacter koseri ATCC BAA-895 |
| 81 | 3696871 | 3697044 | - | NZ_CP045205.1 | Citrobacter telavivensis |
| 82 | 2936076 | 2936249 | - | NZ_LR134201.1 | Cedecea lapagei |
| 83 | 2835245 | 2835424 | - | NZ_CP045845.1 | Kluyvera intermedia |
| 84 | 1684557 | 1684730 | + | NC_015968.1 | Enterobacter soli |
| 85 | 2682320 | 2682493 | - | NZ_CP061527.1 | Shigella dysenteriae |
| 86 | 1068081 | 1068254 | + | NC_000913.3 | Escherichia coli str. K-12 substr. MG1655 |
| 87 | 2842324 | 2842500 | - | NZ_CP054058.1 | Scandinavium goeteborgense |
| 88 | 2868961 | 2869137 | - | NZ_AP023184.1 | Buttiauxella agrestis |
| 89 | 584093 | 584266 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 90 | 2337304 | 2337489 | + | NZ_CP023529.1 | Lelliottia amnigena |
| 91 | 2534730 | 2534903 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 92 | 2381644 | 2381817 | - | NZ_CP013940.1 | Cronobacter malonaticus LMG 23826 |
| 93 | 1609407 | 1609580 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 94 | 1783467 | 1783640 | + | NZ_CP012257.1 | Cronobacter universalis NCTC 9529 |
| 95 | 2420393 | 2420566 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 96 | 2219764 | 2219937 | - | NZ_CP012268.1 | Cronobacter muytjensii ATCC 51329 |
| 97 | 1658655 | 1658828 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 98 | 1812343 | 1812516 | + | NZ_CP012266.1 | Cronobacter dublinensis subsp. dublinensis LMG 23823 |
| 99 | 3161049 | 3161222 | - | NZ_CP023525.1 | Cedecea neteri |
| 100 | 3434124 | 3434303 | + | NZ_CP042941.1 | Atlantibacter hermannii |
| 101 | 141299 | 141472 | + | NZ_CP057657.1 | Escherichia fergusonii |
| 102 | 1729144 | 1729317 | + | NZ_LR134340.1 | Escherichia marmotae |
| 103 | 2515355 | 2515531 | - | NC_017910.1 | Shimwellia blattae DSM 4481 = NBRC 105725 |
| 104 | 1079099 | 1079272 | + | NZ_AP014857.1 | Escherichia albertii |
| 105 | 1945878 | 1946057 | + | NZ_CP038853.1 | Pantoea vagans |
| 106 | 2633493 | 2633666 | - | NZ_CP038853.1 | Pantoea vagans |
| 107 | 720187 | 720351 | + | NZ_CP038853.1 | Pantoea vagans |
| 108 | 3287781 | 3287963 | - | NZ_CP028271.1 | Mixta intestinalis |
| 109 | 4000486 | 4000650 | - | NZ_CP028271.1 | Mixta intestinalis |
| 110 | 1415112 | 1415294 | - | NZ_CP028271.1 | Mixta intestinalis |
| 111 | 395025 | 395198 | - | NZ_CP028271.1 | Mixta intestinalis |
| 112 | 1607211 | 1607384 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 113 | 1787400 | 1787573 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 114 | 2264983 | 2265156 | + | NZ_CP012264.1 | Cronobacter condimenti 1330 |
| 115 | 3056240 | 3056413 | + | NZ_CP020388.1 | Pluralibacter gergoviae |
| 116 | 1765754 | 1765942 | + | NC_014306.1 | Erwinia billingiae Eb661 |
| 117 | 4530583 | 4530750 | + | NZ_CP049115.1 | Pantoea stewartii |
| 118 | 278763 | 278930 | + | NZ_CP049115.1 | Pantoea stewartii |
| 119 | 2082486 | 2082650 | - | NZ_CP049115.1 | Pantoea stewartii |
| 120 | 277413 | 277580 | - | NZ_CP049115.1 | Pantoea stewartii |
| 121 | 361230 | 361424 | + | NZ_CP049115.1 | Pantoea stewartii |
| 122 | 209741 | 209917 | - | NZ_CP049115.1 | Pantoea stewartii |
| 123 | 1781769 | 1781948 | + | NZ_LN907827.1 | Erwinia gerundensis |
| 124 | 1960361 | 1960567 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 125 | 1011465 | 1011644 | - | NZ_LN907827.1 | Erwinia gerundensis |
| 126 | 2031025 | 2031207 | + | NZ_CP019706.1 | Pantoea alhagi |
| 127 | 3678448 | 3678630 | + | NZ_CP019706.1 | Pantoea alhagi |
| 128 | 441299 | 441472 | + | NZ_CP019706.1 | Pantoea alhagi |
| 129 | 1406575 | 1406739 | + | NZ_CP019706.1 | Pantoea alhagi |
| 130 | 4093538 | 4093726 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 131 | 2968900 | 2969076 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 132 | 1438642 | 1438830 | - | NZ_CP006569.1 | Sodalis praecaptivus |
| 133 | 2361706 | 2361873 | + | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 134 | 4128227 | 4128412 | - | NZ_CP026377.1 | Mixta gaviniae |
| 135 | 2269621 | 2269803 | - | NZ_CP026377.1 | Mixta gaviniae |
| 136 | 1229316 | 1229489 | - | NZ_CP026377.1 | Mixta gaviniae |
| 137 | 242239 | 242403 | - | NZ_CP026377.1 | Mixta gaviniae |
| 138 | 2179147 | 2179329 | - | NZ_CP061511.1 | Mixta calida |
| 139 | 1152027 | 1152200 | - | NZ_CP061511.1 | Mixta calida |
| 140 | 3832780 | 3832965 | - | NZ_CP061511.1 | Mixta calida |
| 141 | 177579 | 177743 | - | NZ_CP061511.1 | Mixta calida |
| 142 | 3398261 | 3398428 | - | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 143 | 2892003 | 2892182 | + | NZ_AP022642.1 | Pseudomonas otitidis |
| 144 | 1438095 | 1438268 | + | NZ_CP034148.1 | Pantoea agglomerans |
| 145 | 3343446 | 3343610 | - | NZ_CP034148.1 | Pantoea agglomerans |
| 146 | 2686149 | 2686322 | - | NZ_CP045720.1 | Pantoea eucalypti |
| 147 | 742646 | 742810 | + | NZ_CP045720.1 | Pantoea eucalypti |
| 148 | 871693 | 871857 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 149 | 2552529 | 2552705 | + | NC_017554.1 | Pantoea ananatis PA13 |
| 150 | 3650369 | 3650587 | + | NZ_CP022562.1 | Pseudomonas monteilii |
| 151 | 2613838 | 2614005 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 152 | 2611687 | 2611857 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 153 | 3436416 | 3436592 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 154 | 2289241 | 2289423 | - | NZ_CP027723.1 | Pseudomonas orientalis |
| 155 | 3537500 | 3537676 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 156 | 4843919 | 4844089 | - | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 157 | 696495 | 696671 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 158 | 1576289 | 1576468 | + | NZ_CP048810.1 | Pseudomonas bijieensis |
| 159 | 1263851 | 1264033 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 160 | 3243004 | 3243180 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 161 | 2544377 | 2544556 | - | NZ_CP035088.1 | Pseudomonas viciae |
| 162 | 4082503 | 4082682 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 163 | 2717359 | 2717529 | + | NZ_CP060009.1 | Pseudomonas sediminis |
| 164 | 100057 | 100233 | + | NZ_CP045722.1 | Pantoea eucalypti |
| 165 | 146485 | 146661 | + | NZ_CP038855.1 | Pantoea vagans |
| 166 | 1202340 | 1202528 | - | NZ_CP025086.1 | Methylovirgula ligni |
| 167 | 2714066 | 2714242 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 168 | 2978685 | 2978858 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 169 | 3246688 | 3246861 | - | NZ_CP014158.1 | Pseudomonas citronellolis |
| 170 | 570495 | 570692 | - | NZ_CP029829.1 | Azospirillum ramasamyi |
| 171 | 114639 | 114815 | - | NZ_CP034150.1 | Pantoea agglomerans |
| 172 | 95045 | 95242 | + | NZ_CP012401.1 | Azospirillum thiophilum |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_003197.2
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF13993.8 | 0.67 | 62 | 1007.0 | opposite-strand | YccJ-like protein |
| 2 | PF03358.17 | 0.66 | 61 | 391 | opposite-strand | NADPH-dependent FMN reductase |
| 3 | PF00258.27 | 0.66 | 61 | 391 | opposite-strand | Flavodoxin |
++ More..