* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_LR134512.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01381.24
|
1.0
|
4
|
88.0
|
opposite-strand
|
Helix-turn-helix
|
2
|
PF13560.8
|
1.0
|
4
|
88.0
|
opposite-strand
|
Helix-turn-helix domain
|
3
|
PF01149.26
|
1.0
|
4
|
1115.0
|
opposite-strand
|
Formamidopyrimidine-DNA glycosylase N-terminal domain
|
4
|
PF06831.16
|
1.0
|
4
|
1115.0
|
opposite-strand
|
Formamidopyrimidine-DNA glycosylase H2TH domain
|
5
|
PF06827.16
|
1.0
|
4
|
1115.0
|
opposite-strand
|
Zinc finger found in FPG and IleRS
|
6
|
PF01121.22
|
1.0
|
4
|
1922.5
|
opposite-strand
|
Dephospho-CoA kinase
|
7
|
PF00005.29
|
0.75
|
3
|
2693
|
opposite-strand
|
ABC transporter
|
8
|
PF01841.21
|
0.75
|
3
|
66
|
same-strand
|
Transglutaminase-like superfamily
|
++ More..