Result : B0KCF2
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | UPF0291 protein Teth39_0326 |
| NCBI Accession ID | CP000924.1 |
| Organism | Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) (Clostridium thermohydrosulfuricum) |
| Left | 366008 |
| Right | 366235 |
| Strand | + |
| Nucleotide Sequence | ATGATAACGAGAGAAATGATAGATAGAATAAATTTCCTTTATCACAAATCACAAACAGAAGGTTTAACAGAAGAGGAAAAAGAAGAGCAGAAAAGGCTGAGGCAAGAATACGTGAAAGAAATAAAAGAGAGAGTAAGAAGAGAATTAGAAAGTATTAAATATGCTAACAATAGTTGCGAACATTGTGGTCATGACCATCATCACCATCATCACCACCACAGACATTAA |
| Sequence | MITREMIDRINFLYHKSQTEGLTEEEKEEQKRLRQEYVKEIKERVRRELESIKYANNSCEHCGHDHHHHHHHHRH |
| Source of smORF | Swiss-Prot |
| Function | |
| Pubmed ID | |
| Domain | |
| Functional Category | Others |
| Uniprot ID | B0KCF2 |
| ORF Length (Amino Acid) | 75 |
++ More..
| Conservation Analysis |
No. of Species: 6
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 361425 | 361652 | + | NC_014964.1 | Thermoanaerobacter brockii subsp. finnii Ako-1 |
| 2 | 2081270 | 2081485 | - | NC_013921.1 | Thermoanaerobacter italicus Ab9 |
| 3 | 1985851 | 1986066 | - | NC_014209.1 | Thermoanaerobacter mathranii subsp. mathranii str. A3 |
| 4 | 2015652 | 2015879 | - | NZ_CP009170.1 | Thermoanaerobacter kivui |
| 5 | 2349106 | 2349333 | - | NC_015958.1 | Thermoanaerobacter wiegelii Rt8.B1 |
| 6 | 2972176 | 2972397 | + | NZ_CP022464.2 | Enterocloster bolteae |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_014964.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00326.23 | 0.67 | 4 | 824.0 | same-strand | Prolyl oligopeptidase family |
| 2 | PF07758.13 | 0.83 | 5 | 148 | opposite-strand | Protein of unknown function (DUF1614) |
| 3 | PF00202.23 | 0.83 | 5 | 21 | same-strand | Aminotransferase class-III |
| 4 | PF14595.8 | 0.83 | 5 | 1470 | same-strand | Thioredoxin |
| 5 | PF02867.17 | 0.83 | 5 | 2134 | same-strand | Ribonucleotide reductase, barrel domain |
| 6 | PF00317.23 | 0.83 | 5 | 2134 | same-strand | Ribonucleotide reductase, all-alpha domain |
| 7 | PF12637.9 | 0.83 | 5 | 2134 | same-strand | TSCPD domain |
| 8 | PF00990.23 | 0.83 | 5 | 4659 | same-strand | Diguanylate cyclase, GGDEF domain |
| 9 | PF01590.28 | 0.83 | 5 | 4659 | same-strand | GAF domain |
| 10 | PF13185.8 | 0.83 | 5 | 4659 | same-strand | GAF domain |
| 11 | PF13492.8 | 0.83 | 5 | 4659 | same-strand | GAF domain |
++ More..