Result : SDP3
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | SDP3 |
| NCBI Accession ID | WP_015342994.1 |
| Organism | A.tumefaciens |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MNVARSFNNWRKYRQTVAELGRMSTRELHDLGIDRGEIRNVARAAIAR |
| Source of smORF | Literature-mining |
| Function | DUF1127 protein, upregulated after heat shock, plays a role in cell aggregation and biofilm formation. The mutant shows increased glycine/serine( c1 metabolism) conversion, increased phosphate acquisition and increased denitrification (nitrate respiration). |
| Pubmed ID | 29967118 |
| Domain | CDD:420128 |
| Functional Category | Others |
| Uniprot ID | |
| ORF Length (Amino Acid) | 48 |
++ More..
| Conservation Analysis |
No. of Species: 78
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1037924 | 1038070 | + | NC_020062.1 | Rhizobium tropici CIAT 899 |
| 2 | 448891 | 449037 | - | NZ_CP013503.1 | Rhizobium esperanzae |
| 3 | 387273 | 387419 | - | NZ_CP071607.1 | Rhizobium binae |
| 4 | 1467130 | 1467276 | + | NZ_CP032695.1 | Rhizobium jaguaris |
| 5 | 2435243 | 2435389 | - | NZ_CP032695.1 | Rhizobium jaguaris |
| 6 | 343879 | 344025 | - | NZ_CP013534.1 | Rhizobium phaseoli |
| 7 | 1925601 | 1925747 | + | NZ_CP053857.1 | Rhizobium pusense |
| 8 | 301809 | 301955 | + | NZ_CP071681.1 | Rhizobium ruizarguesonis |
| 9 | 569767 | 569913 | + | NZ_CP041241.1 | Ensifer mexicanus |
| 10 | 2416731 | 2416877 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 11 | 710236 | 710382 | + | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 12 | 1449644 | 1449790 | - | NZ_HG938353.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 13 | 2083959 | 2084105 | + | NZ_CP061004.1 | Agrobacterium tumefaciens |
| 14 | 1884255 | 1884401 | + | NZ_CP048635.1 | Rhizobium oryzihabitans |
| 15 | 1923961 | 1924107 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 16 | 1923513 | 1923656 | - | NZ_CP032694.1 | Rhizobium jaguaris |
| 17 | 1020348 | 1020494 | - | NZ_HG938354.1 | Neorhizobium galegae bv. orientalis str. HAMBI 540 |
| 18 | 1538519 | 1538665 | - | NZ_CP034998.1 | Rhizobium acidisoli |
| 19 | 1968784 | 1968930 | - | NZ_CP071604.1 | Rhizobium binae |
| 20 | 3778095 | 3778241 | - | NZ_CP071454.1 | Rhizobium lentis |
| 21 | 1631037 | 1631183 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 22 | 1630588 | 1630731 | - | NC_020059.1 | Rhizobium tropici CIAT 899 |
| 23 | 2467245 | 2467391 | + | NZ_CP054027.1 | Rhizobium hidalgonense |
| 24 | 638558 | 638704 | + | NZ_CP006880.1 | Rhizobium gallicum bv. gallicum R602sp |
| 25 | 590088 | 590234 | + | NZ_CP054021.1 | Rhizobium indicum |
| 26 | 1918748 | 1918894 | - | NZ_CP071612.1 | Rhizobium bangladeshense |
| 27 | 1890322 | 1890468 | - | NZ_CP020906.1 | Rhizobium etli |
| 28 | 1943194 | 1943340 | - | NZ_CP013532.1 | Rhizobium phaseoli |
| 29 | 1941326 | 1941472 | - | NZ_CP013500.1 | Rhizobium esperanzae |
| 30 | 107094 | 107240 | + | NZ_LR723671.1 | Pseudorhizobium flavum |
| 31 | 2211525 | 2211671 | - | NZ_CP071678.1 | Rhizobium ruizarguesonis |
| 32 | 2600579 | 2600725 | - | NZ_CP049241.1 | Rhizobium pseudoryzae |
| 33 | 31073 | 31219 | + | NZ_CP035001.1 | Rhizobium acidisoli |
| 34 | 209541 | 209687 | - | NZ_CP054029.1 | Rhizobium hidalgonense |
| 35 | 1712633 | 1712779 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 36 | 1712190 | 1712333 | - | NZ_CP006877.1 | Rhizobium gallicum bv. gallicum R602sp |
| 37 | 1169078 | 1169224 | - | NZ_CP054028.1 | Rhizobium hidalgonense |
| 38 | 1172291 | 1172437 | + | NZ_CP049249.1 | Rhizobium rhizoryzae |
| 39 | 144018 | 144164 | + | NZ_CP071456.1 | Rhizobium lentis |
| 40 | 1592364 | 1592510 | - | NZ_CP015881.1 | Ensifer adhaerens |
| 41 | 674821 | 674967 | + | NZ_CP015882.1 | Ensifer adhaerens |
| 42 | 2312167 | 2312313 | - | NZ_CP049250.1 | Rhizobium rhizoryzae |
| 43 | 1475708 | 1475851 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 44 | 1475161 | 1475304 | - | NZ_CP029451.1 | Sinorhizobium fredii CCBAU 25509 |
| 45 | 1680882 | 1681025 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 46 | 1680326 | 1680469 | - | NZ_CP013107.1 | Sinorhizobium americanum |
| 47 | 1369858 | 1370001 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 48 | 1369281 | 1369424 | - | NZ_CP015880.1 | Ensifer adhaerens |
| 49 | 1666444 | 1666587 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 50 | 1665994 | 1666137 | - | NC_020528.1 | Sinorhizobium meliloti 2011 |
| 51 | 1723760 | 1723903 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 52 | 1723199 | 1723342 | - | NZ_CP041238.1 | Ensifer mexicanus |
| 53 | 1532556 | 1532702 | - | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 54 | 783103 | 783249 | + | NZ_FO082820.1 | Pseudorhizobium banfieldiae |
| 55 | 1290149 | 1290292 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 56 | 1289515 | 1289658 | - | NZ_CP034909.1 | Ensifer alkalisoli |
| 57 | 1630792 | 1630938 | - | NZ_LR723670.1 | Pseudorhizobium flavum |
| 58 | 967243 | 967389 | + | NZ_LR723670.1 | Pseudorhizobium flavum |
| 59 | 1332232 | 1332375 | - | NZ_CP010803.1 | Martelella endophytica |
| 60 | 3988562 | 3988705 | + | NZ_CP010803.1 | Martelella endophytica |
| 61 | 4403751 | 4403894 | - | NZ_CP010803.1 | Martelella endophytica |
| 62 | 469267 | 469413 | - | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 63 | 468644 | 468787 | - | NZ_CP048632.1 | Rhizobium oryzihabitans |
| 64 | 1269908 | 1270054 | + | NZ_CP053856.1 | Rhizobium pusense |
| 65 | 1270528 | 1270671 | + | NZ_CP053856.1 | Rhizobium pusense |
| 66 | 2358220 | 2358363 | + | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 67 | 1504462 | 1504605 | - | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 68 | 2358710 | 2358853 | + | NZ_CP020330.1 | Martelella mediterranea DSM 17316 |
| 69 | 1828299 | 1828445 | + | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 70 | 1828717 | 1828860 | + | NZ_CP059896.1 | Ciceribacter thiooxidans |
| 71 | 1270954 | 1271100 | + | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 72 | 1271560 | 1271703 | + | NZ_CP061003.1 | Agrobacterium tumefaciens |
| 73 | 1348814 | 1348957 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 74 | 1348261 | 1348404 | - | NZ_CP023067.1 | Ensifer sojae CCBAU 05684 |
| 75 | 2831024 | 2831164 | + | NZ_CP032509.1 | Georhizobium profundi |
| 76 | 867399 | 867545 | - | NC_010103.1 | Brucella canis ATCC 23365 |
| 77 | 869029 | 869175 | - | NC_004310.3 | Brucella suis 1330 |
| 78 | 895931 | 896077 | - | NC_009505.1 | Brucella ovis ATCC 25840 |
| 79 | 873231 | 873377 | - | NC_013119.1 | Brucella microti CCM 4915 |
| 80 | 1116469 | 1116615 | + | NC_003317.1 | Brucella melitensis bv. 1 str. 16M |
| 81 | 1117567 | 1117713 | + | NC_022905.1 | Brucella ceti TE10759-12 |
| 82 | 887018 | 887164 | - | NC_007618.1 | Brucella abortus 2308 |
| 83 | 1839639 | 1839785 | + | NZ_LT605585.1 | Brucella inopinata |
| 84 | 890439 | 890579 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 85 | 3030875 | 3031015 | - | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 86 | 890249 | 890389 | + | NC_002678.2 | Mesorhizobium japonicum MAFF 303099 |
| 87 | 4469977 | 4470117 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 88 | 332437 | 332577 | - | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 89 | 4469786 | 4469926 | + | NZ_CP015318.1 | Mesorhizobium amorphae CCNWGS0123 |
| 90 | 3405361 | 3405501 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 91 | 5633157 | 5633297 | - | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 92 | 3405171 | 3405311 | + | NZ_CP015064.1 | Mesorhizobium ciceri biovar biserrulae |
| 93 | 372747 | 372896 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 94 | 1549635 | 1549781 | - | NZ_CP017940.1 | Phyllobacterium zundukense |
| 95 | 4165145 | 4165285 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 96 | 1415081 | 1415221 | + | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 97 | 4165335 | 4165475 | - | NZ_CP033507.1 | Mesorhizobium jarvisii |
| 98 | 4112624 | 4112764 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 99 | 1451915 | 1452055 | + | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 100 | 4112814 | 4112954 | - | NC_015675.1 | Mesorhizobium opportunistum WSM2075 |
| 101 | 917469 | 917615 | - | NZ_CP022604.1 | [Ochrobactrum] quorumnocens |
| 102 | 3668164 | 3668304 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 103 | 1441380 | 1441520 | + | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 104 | 3668354 | 3668494 | - | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 105 | 2623009 | 2623161 | + | NZ_CP033361.1 | Mesorhizobium erdmanii |
| 106 | 1050095 | 1050241 | - | NZ_CP064063.1 | Brucella anthropi |
| 107 | 3843005 | 3843145 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 108 | 1465779 | 1465919 | + | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 109 | 3843194 | 3843334 | - | NC_019973.1 | Mesorhizobium australicum WSM2073 |
| 110 | 946497 | 946643 | - | NZ_CP054836.1 | Oricola thermophila |
| 111 | 6943634 | 6943774 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 112 | 2269418 | 2269558 | - | NZ_CP050296.1 | Mesorhizobium huakuii |
| 113 | 6943444 | 6943584 | + | NZ_CP050296.1 | Mesorhizobium huakuii |
| 114 | 2577859 | 2578002 | - | NZ_CP072611.1 | Aureimonas populi |
| 115 | 1916474 | 1916626 | + | NZ_CP031844.2 | Bartonella krasnovii |
| 116 | 200811 | 200963 | + | NZ_CP031843.2 | Bartonella kosoyi |
| 117 | 2486953 | 2487105 | + | NC_010161.1 | Bartonella tribocorum CIP 105476 |
| 118 | 1758259 | 1758405 | - | NZ_CP036532.1 | Roseitalea porphyridii |
| 119 | 1784057 | 1784209 | + | NZ_LR134527.1 | Bartonella elizabethae |
| 120 | 251637 | 251786 | + | NZ_CP046908.1 | Stappia indica |
| 121 | 252104 | 252256 | + | NZ_CP046908.1 | Stappia indica |
| 122 | 252557 | 252706 | + | NZ_CP046908.1 | Stappia indica |
| 123 | 151387 | 151539 | - | NZ_LR134529.1 | Bartonella vinsonii |
| 124 | 1813892 | 1814047 | - | NZ_HG965802.1 | Bartonella henselae |
| 125 | 1688764 | 1688904 | + | NZ_CP019044.1 | Salaquimonas pukyongi |
| 126 | 5147487 | 5147627 | + | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 127 | 1223815 | 1223955 | - | NZ_CP018171.1 | Mesorhizobium oceanicum |
| 128 | 1444027 | 1444179 | - | NC_014932.1 | Bartonella clarridgeiae 73 |
| 129 | 85996 | 86148 | + | NC_008783.1 | Bartonella bacilliformis KC583 |
| 130 | 2332239 | 2332376 | - | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 131 | 2331701 | 2331835 | - | NC_015259.1 | Polymorphum gilvum SL003B-26A1 |
| 132 | 411893 | 412045 | - | NZ_CP010401.1 | Bartonella ancashensis |
| 133 | 2249988 | 2250140 | + | NC_012846.1 | Bartonella grahamii as4aup |
| 134 | 1520305 | 1520457 | - | NC_020300.1 | Bartonella australis Aust/NH1 |
| 135 | 1290888 | 1291034 | + | NZ_CP015367.1 | Methylobacterium phyllosphaerae |
| 136 | 1986012 | 1986158 | + | NZ_CP003811.1 | Methylobacterium oryzae CBMB20 |
| 137 | 334426 | 334572 | - | NZ_CP043538.1 | Methylobacterium mesophilicum SR1.6/6 |
| 138 | 1659085 | 1659231 | + | NC_010505.1 | Methylobacterium radiotolerans JCM 2831 |
| 139 | 3312128 | 3312250 | + | NZ_CP004372.1 | Roseibacterium elongatum DSM 19469 |
| 140 | 3287170 | 3287325 | + | NZ_CP004393.1 | Celeribacter indicus |
| 141 | 1749109 | 1749258 | - | NZ_LT960614.1 | Hartmannibacter diazotrophicus |
| 142 | 2303794 | 2303940 | - | NC_011894.1 | Methylobacterium nodulans ORS 2060 |
| 143 | 2083169 | 2083312 | + | NC_023135.1 | Leisingera methylohalidivorans DSM 14336 |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_HG938353.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF01134.24 | 0.72 | 56 | 544 | same-strand | Glucose inhibited division protein A |
| 2 | PF05698.16 | 0.6 | 47 | 2407.5 | opposite-strand | Bacterial trigger factor protein (TF) C-terminus |
| 3 | PF05697.15 | 0.6 | 47 | 2407.5 | opposite-strand | Bacterial trigger factor protein (TF) |
| 4 | PF00254.30 | 0.6 | 47 | 2407.5 | opposite-strand | FKBP-type peptidyl-prolyl cis-trans isomerase |
++ More..