* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP013237.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF00072.26
|
1.0
|
2
|
2070.5
|
same-strand
|
Response regulator receiver domain
|
2
|
PF04607.19
|
1.0
|
2
|
1446.5
|
same-strand
|
Region found in RelA / SpoT proteins
|
3
|
PF08534.12
|
1.0
|
2
|
119.0
|
same-strand
|
Redoxin
|
4
|
PF00578.23
|
1.0
|
2
|
119.0
|
same-strand
|
AhpC/TSA family
|
5
|
PF00664.25
|
1.0
|
2
|
0
|
same-strand
|
ABC transporter transmembrane region
|
6
|
PF00005.29
|
1.0
|
2
|
872.0
|
same-strand
|
ABC transporter
|
7
|
PF02463.21
|
1.0
|
2
|
0.0
|
same-strand
|
RecF/RecN/SMC N terminal domain
|
8
|
PF12802.9
|
1.0
|
2
|
3550.0
|
same-strand
|
MarR family
|
9
|
PF06508.15
|
1.0
|
2
|
4532.0
|
opposite-strand
|
Queuosine biosynthesis protein QueC
|
10
|
PF02568.16
|
1.0
|
2
|
4532.0
|
opposite-strand
|
Thiamine biosynthesis protein (ThiI)
|
++ More..