Result : CcoM
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | CcoM |
| NCBI Accession ID | PDB: 5DJQ_Q |
| Organism | Pseudomonas stutzeri ATCC 14405 |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MFVDNVVLAGVVTVGLMVAFLAGFGYFIWRDAHKKS |
| Source of smORF | Literature-mining |
| Function | Stabilisation of the cytochrome c oxidase complex cbb3 isoform 1 by interacting with its subunits. May aslo play a role in anaerobic denitrification |
| Pubmed ID | 26814183 |
| Domain | |
| Functional Category | Regulator |
| Uniprot ID | |
| ORF Length (Amino Acid) | 36 |
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| Conservation Analysis |
No. of Species: 54
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 3911680 | 3911796 | + | NZ_CP070505.1 | Pseudomonas toyotomiensis |
| 2 | 1446293 | 1446409 | + | NZ_CP061079.1 | Pseudomonas chlororaphis |
| 3 | 1195960 | 1196073 | + | NZ_CP014870.1 | Pseudomonas silesiensis |
| 4 | 1607437 | 1607547 | + | NZ_CP014158.1 | Pseudomonas citronellolis |
| 5 | 4655457 | 4655570 | - | NZ_CP070503.1 | Pseudomonas atacamensis |
| 6 | 2431877 | 2431990 | - | NZ_CP005960.1 | Pseudomonas mandelii JR-1 |
| 7 | 4448035 | 4448151 | - | NZ_CP071706.1 | Pseudomonas donghuensis |
| 8 | 1606000 | 1606116 | + | NZ_CP043311.1 | Pseudomonas lalkuanensis |
| 9 | 1961083 | 1961199 | + | NZ_AP014862.1 | Pseudomonas furukawaii |
| 10 | 1510843 | 1510953 | + | NZ_CP047698.1 | Pseudomonas knackmussii |
| 11 | 1502777 | 1502893 | + | NZ_CP034725.1 | Pseudomonas brassicacearum |
| 12 | 1504018 | 1504134 | + | NZ_LS999205.1 | Pseudomonas protegens CHA0 |
| 13 | 1465089 | 1465202 | + | NZ_CP062252.1 | Pseudomonas allokribbensis |
| 14 | 1495489 | 1495605 | + | NZ_CP062253.1 | Pseudomonas gozinkensis |
| 15 | 4539279 | 4539395 | - | NZ_CP014205.2 | Pseudomonas glycinae |
| 16 | 1531943 | 1532059 | + | NZ_CP029608.1 | Pseudomonas kribbensis |
| 17 | 1469207 | 1469323 | + | NZ_CP027723.1 | Pseudomonas orientalis |
| 18 | 1525314 | 1525430 | + | NZ_CP051487.1 | Pseudomonas umsongensis |
| 19 | 1498380 | 1498496 | + | NZ_CP035088.1 | Pseudomonas viciae |
| 20 | 3705370 | 3705483 | - | NC_002516.2 | Pseudomonas aeruginosa PAO1 |
| 21 | 2136459 | 2136569 | + | NZ_CP048833.1 | Pseudomonas multiresinivorans |
| 22 | 1251964 | 1252080 | + | NC_021505.1 | Pseudomonas putida NBRC 14164 |
| 23 | 2238524 | 2238640 | - | NZ_CP031146.1 | Pseudomonas plecoglossicida |
| 24 | 1360628 | 1360744 | + | NC_008027.1 | Pseudomonas entomophila L48 |
| 25 | 1693615 | 1693731 | + | NZ_CP054205.1 | Pseudomonas rhodesiae |
| 26 | 3521740 | 3521856 | - | NZ_CP009365.1 | Pseudomonas soli |
| 27 | 1363109 | 1363225 | + | NZ_CP024159.1 | Pseudomonas mosselii |
| 28 | 4577893 | 4578009 | - | NZ_CP022562.1 | Pseudomonas monteilii |
| 29 | 1214447 | 1214560 | + | NZ_CP062158.2 | Pseudomonas lundensis |
| 30 | 1657639 | 1657755 | + | NZ_CP068551.1 | Pseudomonas khazarica |
| 31 | 3453157 | 3453273 | - | NZ_CP013124.1 | Pseudomonas mendocina S5.2 |
| 32 | 3615468 | 3615584 | - | NZ_CP060009.1 | Pseudomonas sediminis |
| 33 | 1591852 | 1591971 | - | NZ_AP022642.1 | Pseudomonas otitidis |
| 34 | 1790234 | 1790344 | + | NZ_CP049044.1 | Pseudomonas psychrophila |
| 35 | 5103523 | 5103639 | - | NZ_CP012400.2 | Pseudomonas yamanorum |
| 36 | 2686688 | 2686804 | - | NZ_CP048810.1 | Pseudomonas bijieensis |
| 37 | 1480641 | 1480757 | + | NZ_CP023272.1 | Pseudomonas lurida |
| 38 | 443226 | 443336 | + | NZ_CP012676.1 | Pseudomonas versuta |
| 39 | 1082621 | 1082740 | - | NZ_CP011797.1 | Reinekea forsetii |
| 40 | 1412605 | 1412721 | + | NZ_CP046621.1 | Pseudomonas alkylphenolica |
| 41 | 1482809 | 1482925 | + | NZ_CP010896.1 | Pseudomonas simiae |
| 42 | 5088465 | 5088581 | + | NZ_CP014262.1 | Pseudomonas corrugata |
| 43 | 710490 | 710600 | - | NZ_CP045302.1 | Azotobacter salinestris |
| 44 | 4197703 | 4197834 | - | NZ_CP022684.1 | Ketobacter alkanivorans |
| 45 | 255910 | 256026 | - | NZ_CP018139.1 | Halomonas aestuarii |
| 46 | 3926286 | 3926396 | - | NZ_CP061941.1 | Marinomonas algicola |
| 47 | 3126966 | 3127076 | - | NC_012560.1 | Azotobacter vinelandii DJ |
| 48 | 1555026 | 1555142 | + | NZ_CP018420.1 | Pseudomonas veronii |
| 49 | 2984215 | 2984331 | - | NZ_CP042382.1 | Pistricoccus aurantiacus |
| 50 | 307119 | 307229 | + | NZ_CP012362.1 | Oblitimonas alkaliphila |
| 51 | 1684916 | 1685032 | + | NZ_CP027756.1 | Pseudomonas synxantha |
| 52 | 4582886 | 4582996 | - | NZ_CP007039.1 | Pseudomonas cichorii JBC1 |
| 53 | 1408443 | 1408553 | + | NZ_LR215729.2 | Pseudomonas marincola |
| 54 | 1616626 | 1616736 | + | NZ_CP011835.1 | Azotobacter chroococcum |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP061079.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF12137.10 | 0.65 | 35 | 1388 | opposite-strand | RNA polymerase recycling family C-terminal |
| 2 | PF18339.3 | 0.65 | 35 | 1388 | opposite-strand | RapA N-terminal Tudor like domain 1 |
| 3 | PF18337.3 | 0.65 | 35 | 1388 | opposite-strand | RapA N-terminal Tudor like domain |
| 4 | PF00271.33 | 0.65 | 35 | 1437 | opposite-strand | Helicase conserved C-terminal domain |
| 5 | PF04851.17 | 0.65 | 35 | 1412.5 | opposite-strand | Type III restriction enzyme, res subunit |
| 6 | PF07690.18 | 0.61 | 33 | 3973.0 | same-strand | Major Facilitator Superfamily |
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