Result : FbpC
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | FbpC |
| NCBI Accession ID | WP_100069434.1 |
| Organism | Bacillus |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MTMLFLLGAVCTYSVLIGFVLKGISNKSV |
| Source of smORF | Literature-mining |
| Function | This small basic protein might serve as an RNA chaperone modulating the activity of FsrA RNA. Its function in repressing iron requiring proteins may vary from target to target. |
| Pubmed ID | 18697947 |
| Domain | CDD:380216 |
| Functional Category | Regulator |
| Uniprot ID | |
| ORF Length (Amino Acid) | 29 |
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| Conservation Analysis |
No. of Species: 16
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 2316286 | 2316375 | - | NC_000964.3 | Bacillus subtilis subsp. subtilis str. 168 |
| 2 | 3940287 | 3940376 | + | NZ_CP029364.1 | Bacillus halotolerans |
| 3 | 2125413 | 2125502 | - | NZ_CP013984.1 | Bacillus inaquosorum |
| 4 | 2185557 | 2185646 | - | NZ_CP034943.1 | Bacillus subtilis subsp. spizizenii ATCC 6633 = JCM 2499 |
| 5 | 2114192 | 2114281 | - | NZ_CP051464.1 | Bacillus mojavensis |
| 6 | 2193349 | 2193441 | - | NZ_CP048852.1 | Bacillus tequilensis |
| 7 | 2271892 | 2271984 | - | NZ_CP033052.1 | Bacillus vallismortis |
| 8 | 2158099 | 2158194 | - | NZ_CP053376.1 | Bacillus amyloliquefaciens |
| 9 | 1797807 | 1797902 | + | NZ_CP011937.1 | Bacillus velezensis |
| 10 | 2500179 | 2500268 | - | NZ_LT603683.1 | Bacillus glycinifermentans |
| 11 | 2018242 | 2018334 | - | NZ_CP011150.1 | Bacillus altitudinis |
| 12 | 3361167 | 3361259 | + | NZ_CP017786.1 | Bacillus xiamenensis |
| 13 | 3270223 | 3270315 | + | NZ_CP043404.1 | Bacillus safensis |
| 14 | 2392725 | 2392820 | - | NZ_CP023665.1 | Bacillus paralicheniformis |
| 15 | 2291376 | 2291471 | - | NC_006270.3 | Bacillus licheniformis DSM 13 = ATCC 14580 |
| 16 | 2654902 | 2654988 | + | NZ_CP017703.1 | Aeribacillus pallidus |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000964.3
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF02739.18 | 0.88 | 14 | 4399.5 | same-strand | 5'-3' exonuclease, N-terminal resolvase-like domain |
| 2 | PF01367.22 | 0.88 | 14 | 4399.5 | same-strand | 5'-3' exonuclease, C-terminal SAM fold |
| 3 | PF10752.11 | 1.0 | 16 | 3821.0 | same-strand | Protein of unknown function (DUF2533) |
| 4 | PF00350.25 | 1.0 | 16 | 174.0 | same-strand | Dynamin family |
| 5 | PF01926.25 | 1.0 | 16 | 174.0 | same-strand | 50S ribosome-binding GTPase |
| 6 | PF04140.16 | 0.94 | 15 | 71 | same-strand | Isoprenylcysteine carboxyl methyltransferase (ICMT) family |
| 7 | PF04191.15 | 0.75 | 12 | 71.0 | same-strand | Phospholipid methyltransferase |
| 8 | PF00195.21 | 0.88 | 14 | 581.0 | same-strand | Chalcone and stilbene synthases, N-terminal domain |
| 9 | PF02797.17 | 0.94 | 15 | 581 | same-strand | Chalcone and stilbene synthases, C-terminal domain |
| 10 | PF08541.12 | 0.94 | 15 | 581 | same-strand | 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal |
| 11 | PF00860.22 | 0.81 | 13 | 1752 | same-strand | Permease family |
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