Result : Prli42
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Prli42 |
| NCBI Accession ID | WP_003722501.1 |
| Organism | Listeria |
| Left | |
| Right | |
| Strand | |
| Nucleotide Sequence | |
| Sequence | MTNKKVVRVVVILMLIAIVLSSVLTGVLMFL |
| Source of smORF | Literature-mining |
| Function | It is a small protein conserved in Firmicutes. It plays a role in activation of sigmaB response factor through the stressosome. Using LC-MS studies, several interaction partners belonging to the stressosome were identified like RsbR,RsbB and RsbR-like proteins. It is shown to be important for sigma B activation, bacterial growth following oxidative stress and for survival in macrophages. |
| Pubmed ID | 28191904 |
| Domain | CDD:411443 |
| Functional Category | Regulator |
| Uniprot ID | |
| ORF Length (Amino Acid) | 31 |
++ More..
| Conservation Analysis |
No. of Species: 22
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1399485 | 1399580 | - | NC_003210.1 | Listeria monocytogenes EGD-e |
| 2 | 1425956 | 1426051 | - | NZ_CP009577.1 | Listeria ivanovii subsp. ivanovii |
| 3 | 1378107 | 1378202 | - | NZ_LT906444.1 | Listeria welshimeri |
| 4 | 1308795 | 1308890 | - | NC_013891.1 | Listeria seeligeri serovar 1/2b str. SLCC3954 |
| 5 | 1757107 | 1757202 | + | NZ_CP011102.1 | Listeria weihenstephanensis |
| 6 | 1311424 | 1311519 | - | NZ_LR134483.1 | Listeria grayi |
| 7 | 1031330 | 1031431 | + | NZ_CP068061.1 | Mammaliicoccus vitulinus |
| 8 | 1217660 | 1217761 | - | NZ_LT906462.1 | Mammaliicoccus stepanovicii |
| 9 | 2640616 | 2640708 | + | NZ_CP015378.1 | Fictibacillus phosphorivorans |
| 10 | 2171138 | 2171233 | + | NZ_CP012024.1 | Bacillus smithii |
| 11 | 4554730 | 4554825 | - | NZ_CP017704.1 | Peribacillus simplex NBRC 15720 = DSM 1321 |
| 12 | 2411167 | 2411262 | + | NZ_CP023704.1 | Caldibacillus thermoamylovorans |
| 13 | 1398437 | 1398535 | + | NZ_CP013114.1 | Staphylococcus equorum |
| 14 | 1277297 | 1277374 | + | NC_014925.1 | Staphylococcus pseudintermedius HKU10-03 |
| 15 | 588545 | 588643 | - | NZ_CP018199.1 | Staphylococcus succinus |
| 16 | 2493416 | 2493493 | + | NZ_CP020773.1 | Staphylococcus lutrae |
| 17 | 1314097 | 1314195 | - | NZ_LR134089.1 | Staphylococcus saprophyticus |
| 18 | 1424356 | 1424457 | - | NZ_CP008747.1 | Staphylococcus hyicus |
| 19 | 1193469 | 1193567 | - | NZ_CP065712.1 | Staphylococcus auricularis |
| 20 | 1131896 | 1131997 | + | NZ_CP045927.1 | Staphylococcus agnetis |
| 21 | 1156642 | 1156743 | - | NZ_LT906464.1 | Staphylococcus muscae |
| 22 | 724524 | 724619 | - | NZ_CP019573.1 | Abyssicoccus albus |
++ More..
| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NZ_CP068061.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF00676.22 | 0.73 | 16 | 3817.5 | opposite-strand | Dehydrogenase E1 component |
| 2 | PF02779.26 | 0.77 | 17 | 2844 | opposite-strand | Transketolase, pyrimidine binding domain |
| 3 | PF02780.22 | 0.77 | 17 | 2844 | opposite-strand | Transketolase, C-terminal domain |
| 4 | PF00198.25 | 0.77 | 17 | 1555 | opposite-strand | 2-oxoacid dehydrogenases acyltransferase (catalytic domain) |
| 5 | PF00364.24 | 0.77 | 17 | 1555 | opposite-strand | Biotin-requiring enzyme |
| 6 | PF02817.19 | 0.77 | 17 | 1555 | opposite-strand | e3 binding domain |
| 7 | PF01546.30 | 1.0 | 22 | 171.0 | opposite-strand | Peptidase family M20/M25/M40 |
| 8 | PF00393.21 | 0.86 | 19 | 1361 | opposite-strand | 6-phosphogluconate dehydrogenase, C-terminal domain |
| 9 | PF03446.17 | 0.86 | 19 | 1361 | opposite-strand | NAD binding domain of 6-phosphogluconate dehydrogenase |
| 10 | PF07687.16 | 0.73 | 16 | 191.5 | opposite-strand | Peptidase dimerisation domain |
| 11 | PF06081.13 | 0.68 | 15 | 161 | opposite-strand | Aromatic acid exporter family member 1 |
| 12 | PF11728.10 | 0.68 | 15 | 161 | opposite-strand | Putative aromatic acid exporter C-terminal domain |
| 13 | PF06491.13 | 0.64 | 14 | 1098.5 | opposite-strand | Disulphide isomerase |
++ More..