* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_000913.3
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF12832.9
|
1.0
|
3
|
160.0
|
same-strand
|
MFS 1 like family
|
2
|
PF01306.21
|
1.0
|
3
|
160.0
|
same-strand
|
LacY proton/sugar symporter
|
3
|
PF07690.18
|
1.0
|
3
|
160.0
|
same-strand
|
Major Facilitator Superfamily
|
4
|
PF00874.22
|
1.0
|
3
|
1291.0
|
opposite-strand
|
PRD domain
|
5
|
PF00326.23
|
1.0
|
3
|
2762.0
|
opposite-strand
|
Prolyl oligopeptidase family
|
6
|
PF00459.27
|
1.0
|
3
|
3761.0
|
opposite-strand
|
Inositol monophosphatase family
|
7
|
PF00588.21
|
1.0
|
3
|
4683.0
|
same-strand
|
SpoU rRNA Methylase family
|
8
|
PF00848.21
|
0.67
|
2
|
961
|
opposite-strand
|
Ring hydroxylating alpha subunit (catalytic domain)
|
9
|
PF00355.28
|
0.67
|
2
|
1899.0
|
opposite-strand
|
Rieske [2Fe-2S] domain
|
10
|
PF00866.20
|
0.67
|
2
|
2319
|
opposite-strand
|
Ring hydroxylating beta subunit
|
11
|
PF13806.8
|
0.67
|
2
|
2837
|
opposite-strand
|
Rieske-like [2Fe-2S] domain
|
12
|
PF00106.27
|
0.67
|
2
|
3154
|
opposite-strand
|
short chain dehydrogenase
|
13
|
PF13561.8
|
0.67
|
2
|
3154
|
opposite-strand
|
Enoyl-(Acyl carrier protein) reductase
|
++ More..