Protein Information |
Information Type | Description |
---|---|
Protein name | Cytochrome c-553 (Cytochrome c553) |
NCBI Accession ID | AE001439.1 |
Organism | Helicobacter pylori (strain J99 / ATCC 700824) (Campylobacter pylori J99) |
Left | 1280962 |
Right | 1281252 |
Strand | + |
Nucleotide Sequence | ATGAAAAAGGTTATTGTGGCTTTAGGCGTTTTGGCGTTCGCAAATGTTTTAATGGCAACCGATGTTAAGGCTCTTGTAAAAGGTTGTGCCGCTTGCCATGGGGTTAAGTTTGAAAAGAAAGCTTTAGGTAAAAGCAAAATCGTTAACATGATGAGCGAAAAAGAGATTGAAGAGGATCTTATGGCTTTTAAAAGCGGTGCCAACAAGAATCCTGTCATGACCGCGCAAGCTAAAAAATTAAGCGATGAAGACATCAAAGCTTTAGCCAAATACATCCCCACTCTCAAATAA |
Sequence | MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANKNPVMTAQAKKLSDEDIKALAKYIPTLK |
Source of smORF | Swiss-Prot |
Function | Natural electron acceptor for a formate dehydrogenase. |
Pubmed ID | 9923682 |
Domain | CDD:419674 |
Functional Category | Metal-binding |
Uniprot ID | Q9ZJZ9 |
ORF Length (Amino Acid) | 96 |
Conservation Analysis |
Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
---|---|---|---|---|---|
1 | 1290990 | 1291280 | + | NC_017379.1 | Helicobacter pylori Puno135 |
2 | 1434467 | 1434757 | - | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
3 | 1633467 | 1633760 | + | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
4 | 182942 | 183250 | + | NZ_LS483446.1 | Helicobacter mustelae |
Neighborhood Conservation Analysis |
Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
---|---|---|---|---|---|---|
1 | PF04055.23 | 1.0 | 4 | 95.0 | opposite-strand | Radical SAM superfamily |
2 | PF00293.30 | 1.0 | 4 | 162.5 | same-strand | NUDIX domain |
3 | PF00696.30 | 1.0 | 4 | 637.0 | same-strand | Amino acid kinase family |
4 | PF13840.8 | 1.0 | 4 | 637.0 | same-strand | ACT domain |
5 | PF01842.27 | 0.75 | 3 | 641 | same-strand | ACT domain |
6 | PF12163.10 | 1.0 | 4 | 1851.0 | same-strand | DNA replication regulator |
7 | PF00809.24 | 1.0 | 4 | 3045.0 | same-strand | Pterin binding enzyme |