Result : Q9ZJZ9
| Protein Information |
| Information Type | Description |
|---|---|
| Protein name | Cytochrome c-553 (Cytochrome c553) |
| NCBI Accession ID | AE001439.1 |
| Organism | Helicobacter pylori (strain J99 / ATCC 700824) (Campylobacter pylori J99) |
| Left | 1280962 |
| Right | 1281252 |
| Strand | + |
| Nucleotide Sequence | ATGAAAAAGGTTATTGTGGCTTTAGGCGTTTTGGCGTTCGCAAATGTTTTAATGGCAACCGATGTTAAGGCTCTTGTAAAAGGTTGTGCCGCTTGCCATGGGGTTAAGTTTGAAAAGAAAGCTTTAGGTAAAAGCAAAATCGTTAACATGATGAGCGAAAAAGAGATTGAAGAGGATCTTATGGCTTTTAAAAGCGGTGCCAACAAGAATCCTGTCATGACCGCGCAAGCTAAAAAATTAAGCGATGAAGACATCAAAGCTTTAGCCAAATACATCCCCACTCTCAAATAA |
| Sequence | MKKVIVALGVLAFANVLMATDVKALVKGCAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANKNPVMTAQAKKLSDEDIKALAKYIPTLK |
| Source of smORF | Swiss-Prot |
| Function | Natural electron acceptor for a formate dehydrogenase. |
| Pubmed ID | 9923682 |
| Domain | CDD:419674 |
| Functional Category | Metal-binding |
| Uniprot ID | Q9ZJZ9 |
| ORF Length (Amino Acid) | 96 |
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| Conservation Analysis |
No. of Species: 4
| Sr.No. | Left Position | Right Position | Strand | NCBI Accession id | Species Name |
|---|---|---|---|---|---|
| 1 | 1290990 | 1291280 | + | NC_017379.1 | Helicobacter pylori Puno135 |
| 2 | 1434467 | 1434757 | - | NC_008229.1 | Helicobacter acinonychis str. Sheeba |
| 3 | 1633467 | 1633760 | + | NC_017735.1 | Helicobacter cetorum MIT 99-5656 |
| 4 | 182942 | 183250 | + | NZ_LS483446.1 | Helicobacter mustelae |
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| Neighborhood Conservation Analysis |
* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017379.1
| Sr.No. | Domain | Co-occurrence Frequency | No. of species in which domain occurs with smORF | Median distance b/w smORF and domain bearing ORFs | Orientation relative to smORF | PFAM Information |
|---|---|---|---|---|---|---|
| 1 | PF04055.23 | 1.0 | 4 | 95.0 | opposite-strand | Radical SAM superfamily |
| 2 | PF00293.30 | 1.0 | 4 | 162.5 | same-strand | NUDIX domain |
| 3 | PF00696.30 | 1.0 | 4 | 637.0 | same-strand | Amino acid kinase family |
| 4 | PF13840.8 | 1.0 | 4 | 637.0 | same-strand | ACT domain |
| 5 | PF01842.27 | 0.75 | 3 | 641 | same-strand | ACT domain |
| 6 | PF12163.10 | 1.0 | 4 | 1851.0 | same-strand | DNA replication regulator |
| 7 | PF00809.24 | 1.0 | 4 | 3045.0 | same-strand | Pterin binding enzyme |
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