* Arrows marked in Genome Diagram shows ORFs; Multiple PFAMs can be mapped to a single ORF.
* 'Small ORF' represents the entry/query analyzed.
* Image generated using 'gggenes'(R-Package).
Neighborhood Representative Chosen(Species): NC_017049.1
Sr.No. |
Domain |
Co-occurrence Frequency |
No. of species in which domain occurs with smORF |
Median distance b/w smORF and domain bearing ORFs |
Orientation relative to smORF |
PFAM Information |
1
|
PF01653.20
|
0.67
|
2
|
3684.0
|
same-strand
|
NAD-dependent DNA ligase adenylation domain
|
2
|
PF03120.18
|
0.67
|
2
|
3684.0
|
same-strand
|
NAD-dependent DNA ligase OB-fold domain
|
3
|
PF00533.28
|
0.67
|
2
|
3684.0
|
same-strand
|
BRCA1 C Terminus (BRCT) domain
|
4
|
PF12826.9
|
0.67
|
2
|
3684.0
|
same-strand
|
Helix-hairpin-helix motif
|
5
|
PF03119.18
|
0.67
|
2
|
3684.0
|
same-strand
|
NAD-dependent DNA ligase C4 zinc finger domain
|
6
|
PF01702.20
|
0.67
|
2
|
2458.0
|
same-strand
|
Queuine tRNA-ribosyltransferase
|
7
|
PF02470.22
|
1.0
|
3
|
402
|
same-strand
|
MlaD protein
|
8
|
PF00075.26
|
0.67
|
2
|
1150.0
|
same-strand
|
RNase H
|
9
|
PF06230.13
|
0.67
|
2
|
2895.0
|
opposite-strand
|
LpxI C-terminal domain
|
10
|
PF17930.3
|
0.67
|
2
|
2895.0
|
opposite-strand
|
LpxI N-terminal domain
|
++ More..